PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004129-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 88aa    MW: 9949.05 Da    PI: 9.1351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004129-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10552247
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        + WT+   +l+ +a + + ++   +W   ar +g g+t +++k ++q++
  WALNUT_00004129-RA  5 QTWTAKQNKLFENALAIYDKDtpdRWQNLARAVG-GKTVEEVKRHYQDL 52
                        68********************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.6E-8355IPR001005SANT/Myb domain
PfamPF002492.9E-7552IPR001005SANT/Myb domain
CDDcd001675.55E-7653No hitNo description
Gene3DG3DSA:1.10.10.601.1E-4659IPR009057Homeodomain-like
PROSITE profilePS500906.051753IPR017877Myb-like domain
SuperFamilySSF466891.33E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MAAGQTWTAK QNKLFENALA IYDKDTPDRW QNLARAVGGK TVEEVKRHYQ DLVEDLRQIE  60
TGHVPLPNYR SRTGGNNIKS HSTCNTHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-33376779RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821529.19e-62PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1733e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2I4EQ592e-60A0A2I4EQ59_JUGRE; protein RADIALIS-like 6
STRINGXP_007160753.12e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-35RAD-like 6