PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004088-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 371aa MW: 41598 Da PI: 8.9621

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004088-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.6e-32	172	225	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ WALNUT_00004088-RA 172 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 225 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	169	226	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	170	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	172	225	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	173	224	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MFICSKPTIM IPPSPSLPDL SLQISPPLIS DFEAKKEVVI ISCDDGLGVV LARNKAALYS 60 DRSSTTTDSG SSESDLSHEN GFLLHPDHQQ IMIRTTYNNN NNLRLSEAPM LSLGLKMADH 120 LSTPPLAKVL PRNHHHHRHH KHNHQPQIYG REFKRNNARL TGGTVKRSVR APRMRWTTTL 180 HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KGSGQERTHA 240 VLNPRSGLDL PSPHHHHNAN ILTLLQKSQR METSCGSSSR SSHHALAYFH DFEGNDAKVL 300 DGHDYINADS SLKEMMNCRL DDHSSNNISP LNTNLPNLEF TLGRPNWQMD SKNLIPDLKC 360 HNTTIMSTFT S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MFICSKPTIM IPPSPSLPDL SLQISPPLIS DFEAKKEVVI ISCDDGLGVV LARNKAALYS  60
DRSSTTTDSG SSESDLSHEN GFLLHPDHQQ IMIRTTYNNN NNLRLSEAPM LSLGLKMADH  120
LSTPPLAKVL PRNHHHHRHH KHNHQPQIYG REFKRNNARL TGGTVKRSVR APRMRWTTTL  180
HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KGSGQERTHA  240
VLNPRSGLDL PSPHHHHNAN ILTLLQKSQR METSCGSSSR SSHHALAYFH DFEGNDAKVL  300
DGHDYINADS SLKEMMNCRL DDHSSNNISP LNTNLPNLEF TLGRPNWQMD SKNLIPDLKC  360
HNTTIMSTFT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	173	227	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	173	227	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	173	227	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	173	227	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	173	227	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP283472	3e-65	KP283472.1 Prunus armeniaca aberrant testa shape (ATS) gene, complete cds.
GenBank	KP283473	3e-65	KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821493.1	0.0	PREDICTED: probable transcription factor KAN4
Swissprot	Q9FJV5	4e-52	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A2I4EQ27	0.0	A0A2I4EQ27_JUGRE; probable transcription factor KAN4
STRING	XP_006473404.1	9e-85	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	9e-52	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]