PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003754-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 455aa    MW: 50471.8 Da    PI: 6.2345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003754-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde+l+++++  G g+W+t ++  g+ R++k+c++rw +yl
  WALNUT_00003754-RA 14 KGRWTAEEDEILINYIQSNGEGSWRTLPKNAGLSRCGKSCRLRWINYL 61
                        79********************************************97 PP
2Myb_DNA-binding50.74.1e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T+eE+e +v+++   G++ W++Ia  ++ gRt++++k++w+++l
  WALNUT_00003754-RA  67 RGNITPEEEETIVKLHSAVGNR-WSLIAGNLP-GRTDNEIKNYWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.937961IPR017930Myb domain
SuperFamilySSF466898.41E-2911108IPR009057Homeodomain-like
SMARTSM007176.6E-131363IPR001005SANT/Myb domain
PfamPF002498.1E-151461IPR001005SANT/Myb domain
CDDcd001672.56E-91661No hitNo description
PROSITE profilePS5129425.10862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2565116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002495.7E-1467112IPR001005SANT/Myb domain
CDDcd001672.49E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILINYIQ SNGEGSWRTL PKNAGLSRCG KSCRLRWINY  60
LRADLKRGNI TPEEEETIVK LHSAVGNRWS LIAGNLPGRT DNEIKNYWNT HLSRKLYSFT  120
RTTSESLSSI INMAAACKRR GGRGRTRSRS SAIKELKNTA SAGIVGTSLP KPDHHHHHDG  180
GGGTANNNIS SEVLDPASSK EKPPHDDDLP GTLLEQVEKI PTMMGIMGSW GPPEQKLGDD  240
QVRTINNLGV HAGSCPDNID QRILGGHCGN HEIGKISSST TAGLRPVVLQ HRESEVLEPY  300
EWLDGEITKL SYILESGFVE DHPIENAAHH DHKELIRDQK EQRSVELNVG ALRSRRDHQK  360
LLETTSTDDQ DMESSVLSSS NADGGDQSCY DCSNYSINNK NSSSGFDDEW MDWNWVGGVD  420
QCHNQYWALW NEGDKMSTSC LWEAAGSNKG STEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825594.10.0PREDICTED: myb-related protein B-like
RefseqXP_018825595.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A2I4F1R90.0A0A2I4F1R9_JUGRE; myb-related protein B-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-74myb domain protein 12