PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003750-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

CAMTA

Protein Properties

Length: 953aa MW: 107990 Da PI: 8.0802

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003750-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.3	5e-52	70	184	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 + rwl+++ei+aiL n++ +++ +++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf WALNUT_00003750-RA 70 ARIRWLRPNEIHAILCNYKYFSINAKPLNLPPSGTILLFDRKVLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTF 160 489************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ WALNUT_00003750-RA 161 VRRCYWLLDKSLEHIVLVHYRETQ 184 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.149	63	189	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-75	66	184	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-46	69	182	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	8.82E-8	414	492	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	3.3E-15	588	703	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.86E-14	590	700	No hit	No description
Pfam	PF12796	2.0E-7	590	670	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.71E-15	591	702	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.663	608	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.354	641	673	IPR002110	Ankyrin repeat
SMART	SM00248	2.4E-6	641	670	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.998	789	815	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.236	805	834	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.3E-4	827	849	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	828	852	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	829	849	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	907	929	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.023	909	937	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MNATNLVFAD SSNFLWFKVR RRRLRSEKNH CRGRFWFVRG FMMDGKLVGA EIHGFHTLHD 60 LDVQNTIEEA RIRWLRPNEI HAILCNYKYF SINAKPLNLP PSGTILLFDR KVLRNFRKDG 120 HNWKKKKDGK TVKEAHEHLK VGNEERIHVY YAHGQDNPTF VRRCYWLLDK SLEHIVLVHY 180 RETQELQGSP ATPVNSNSSG VSEPSAPWLS SEEHETESIG PGDNLTVQNH ELTIHEINTL 240 EWDELLLTND SNISTAPTGD KFSSFDQSNQ IAVNGSLHDV SRPFTIALAQ DINLAGAKFS 300 AEVSSFSNLT ELVARNDNIH LSLRDNIHIQ TLESQVNTNG DSITMGSTNS SDILVHDGLQ 360 GQDSFGRWMN HILADSPGSS ENTVLESSIS PGHESFVSSV MDHQKSSAPE QIFTITDISP 420 AWAFSTERTK ECQHLWKSSL FCVCGDACVP AEAVQGGVYR CLVLPHSPGL VNLFMSFDGH 480 KPISQVLNFE YRTSLLSDPV VSSEENYKWE EFQVQLRLAS LLFSTSKSLN IMSNKVSPKS 540 LKEAKKFANK SSIILNGWAD FSKSIEDNKP LFPQAKDGLF ELTLKNKVRE WLLERVVEGS 600 KTKEYDAQGQ GVIHLCAILE YTWAVYLFAC SGLSLDFRDK CGWTALHWAA YHGREKMVAA 660 LLSAGAKPNL VTDPTPGNPG GCTSADLASS KGYDGLAAYL SEKALVEQFN EMSIAGNASG 720 SLDTSSTDNL NTENLSEDQL YLKDTLAAYQ TTAEAAARIQ AAFRERSLKR RTQEIQFSIS 780 EAEAHSIVAA MKIQHAFRKY ESRKRIAAAA RIQHRFRTWK IRKEFLNLRR QAIKIQAVFR 840 GYQMRKQYHK ILWSVGVLEK AVLRWRLKRK GFRGLNVDPI EADPSLKQEG DAEEDFYRTS 900 RKQAEDRVER SVIRVQSMFR SKKAQEEYRR MKMSHNQARL EYEGLLHPDI YMT

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MNATNLVFAD SSNFLWFKVR RRRLRSEKNH CRGRFWFVRG FMMDGKLVGA EIHGFHTLHD  60
LDVQNTIEEA RIRWLRPNEI HAILCNYKYF SINAKPLNLP PSGTILLFDR KVLRNFRKDG  120
HNWKKKKDGK TVKEAHEHLK VGNEERIHVY YAHGQDNPTF VRRCYWLLDK SLEHIVLVHY  180
RETQELQGSP ATPVNSNSSG VSEPSAPWLS SEEHETESIG PGDNLTVQNH ELTIHEINTL  240
EWDELLLTND SNISTAPTGD KFSSFDQSNQ IAVNGSLHDV SRPFTIALAQ DINLAGAKFS  300
AEVSSFSNLT ELVARNDNIH LSLRDNIHIQ TLESQVNTNG DSITMGSTNS SDILVHDGLQ  360
GQDSFGRWMN HILADSPGSS ENTVLESSIS PGHESFVSSV MDHQKSSAPE QIFTITDISP  420
AWAFSTERTK ECQHLWKSSL FCVCGDACVP AEAVQGGVYR CLVLPHSPGL VNLFMSFDGH  480
KPISQVLNFE YRTSLLSDPV VSSEENYKWE EFQVQLRLAS LLFSTSKSLN IMSNKVSPKS  540
LKEAKKFANK SSIILNGWAD FSKSIEDNKP LFPQAKDGLF ELTLKNKVRE WLLERVVEGS  600
KTKEYDAQGQ GVIHLCAILE YTWAVYLFAC SGLSLDFRDK CGWTALHWAA YHGREKMVAA  660
LLSAGAKPNL VTDPTPGNPG GCTSADLASS KGYDGLAAYL SEKALVEQFN EMSIAGNASG  720
SLDTSSTDNL NTENLSEDQL YLKDTLAAYQ TTAEAAARIQ AAFRERSLKR RTQEIQFSIS  780
EAEAHSIVAA MKIQHAFRKY ESRKRIAAAA RIQHRFRTWK IRKEFLNLRR QAIKIQAVFR  840
GYQMRKQYHK ILWSVGVLEK AVLRWRLKRK GFRGLNVDPI EADPSLKQEG DAEEDFYRTS  900
RKQAEDRVER SVIRVQSMFR SKKAQEEYRR MKMSHNQARL EYEGLLHPDI YMT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	24	KVRRRRLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825661.1	0.0	PREDICTED: calmodulin-binding transcription activator 6 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2I4F1Z2	0.0	A0A2I4F1Z2_JUGRE; calmodulin-binding transcription activator 6 isoform X2
STRING	XP_008223308.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]