PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003641-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 538aa    MW: 60597.5 Da    PI: 6.4071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003641-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4432.1e-1351685381374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++ L+ cA+a+s+++l  aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s+++kal+++e +   s+e l++++++ ev+P++
  WALNUT_00003641-RA 168 LKHILIFCARAISDNELLVAQWLMDELRQMVSVTGEPIQRLGAYMLEGLVARLTSSGSNICKALKCKEPA---SAELLSYMHILDEVCPYF 255
                         6799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea++ ++r+HiiDf+i qG QW++L+ a+a+Rp+gpp++R+Tg++++ s   +    + +g+rL+k+Ae+++vpfef+ 
  WALNUT_00003641-RA 256 KFGYMAANGAIAEAMKDDNRIHIIDFQIAQGSQWLTLIPAFAARPGGPPHIRVTGIDDSMSAyaRGGGPNIVGKRLSKLAETFKVPFEFHY 346
                         **********************************************************88878888999********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  +++le+L+v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  r+le+l+yy+a+f+s+
  WALNUT_00003641-RA 347 -AAMSGCEVQLENLEVRPGEALAVNFAFMLHHTPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRVLETLNYYTAMFESI 436
                         .89999************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre++eri+vE+++l+re vn++aceg er+erhe l+kWr+r+++aGF+p+pls+++++++k+ll+++ s  yr+ee++g+l+lgW
  WALNUT_00003641-RA 437 DVTLPREHKERINVEQHCLAREMVNIIACEGPERVERHELLGKWRSRFKMAGFTPYPLSSFVNATIKTLLENYCSS-YRLEERDGALYLGW 526
                         **************************************************************************66.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aW+
  WALNUT_00003641-RA 527 MNRDLVASCAWT 538
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.881142519IPR005202Transcription factor GRAS
PfamPF035147.3E-133168538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MHASQQQRRS GMSNGLYYHS TQEVGAYCLP QFQTFGHQLH YNDRSQGTNF LTQNSNERYC  60
TLESSSANGS YAVYTSPSAT SFSPNGSPMS QQDSQSYNTY GSPISGSYVI NEVNDFKHKL  120
KELETVMLGP DSNFLDSYDY TFQNSTNNTS LAMDSWRQIM EAISKRDLKH ILIFCARAIS  180
DNELLVAQWL MDELRQMVSV TGEPIQRLGA YMLEGLVARL TSSGSNICKA LKCKEPASAE  240
LLSYMHILDE VCPYFKFGYM AANGAIAEAM KDDNRIHIID FQIAQGSQWL TLIPAFAARP  300
GGPPHIRVTG IDDSMSAYAR GGGPNIVGKR LSKLAETFKV PFEFHYAAMS GCEVQLENLE  360
VRPGEALAVN FAFMLHHTPD ESVSTQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAAFYP  420
RVLETLNYYT AMFESIDVTL PREHKERINV EQHCLAREMV NIIACEGPER VERHELLGKW  480
RSRFKMAGFT PYPLSSFVNA TIKTLLENYC SSYRLEERDG ALYLGWMNRD LVASCAWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6217553825378Protein SCARECROW
5b3h_D5e-6217553825378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824686.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018824687.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018824688.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018824689.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4EZ610.0A0A2I4EZ61_JUGRE; scarecrow-like transcription factor PAT1
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]