PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003546-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 322aa    MW: 36606 Da    PI: 6.2602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003546-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
  WALNUT_00003546-RA 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTKTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding44.14.9e-1467112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E+  +++  ++lG++ W++Ia++++  Rt++++k++w+++l
  WALNUT_00003546-RA  67 RGNFTPHEEGMIIHFQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.006965IPR017930Myb domain
SuperFamilySSF466893.63E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002492.2E-161461IPR001005SANT/Myb domain
CDDcd001672.72E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129418.03566116IPR017930Myb domain
SMARTSM007171.3E-1266114IPR001005SANT/Myb domain
PfamPF002491.9E-1267112IPR001005SANT/Myb domain
CDDcd001672.75E-869111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRPPCFDKF GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTKTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH FQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFH  120
SVLDPTVASD STTTQSVTKS FNESRNLDII SNPAPSLRLN QSCTYASSTE NISRLLEGWM  180
RSSPKTDTHL RGPQNKILDE ESNEKKCDFG NSAEMTNLLQ CYQPKDEQEG NGDLISQEEF  240
DSMLSFENMN NAAWDKSTCD SVPDQSPQTA AANCDQKVNV TTERNKLRSE KNPPLSFLEK  300
WLLDESAGQV EDDQMMDLSQ MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-241411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822677.10.0PREDICTED: transcription factor MYB30-like
SwissprotB3VTV71e-127MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2I4ETE20.0A0A2I4ETE2_JUGRE; transcription factor MYB30-like
STRINGXP_007161907.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82033145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-101myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]