PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003515-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 50196.2 Da PI: 8.2248 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.2e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ WALNUT_00003515-RA 48 DEADCIYYLRTGFCGYGPRCRFNHPR 73 6799********************96 PP | |||||||
2 | zf-CCCH | 39.1 | 1.2e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ WALNUT_00003515-RA 94 QPVCQYYMRTGTCKFGASCKYHHPR 118 689********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.9e-12 | 139 | 163 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ WALNUT_00003515-RA 139 EKECSYYVKTGQCKFGATCKFHHPQ 163 689********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.3e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p WALNUT_00003515-RA 298 PGQPECQHYMRTGDCKFGSSCRYHHPP 324 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.2 | 3.2e-09 | 343 | 366 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G Ck+ H+ WALNUT_00003515-RA 343 APPCVHYAQRGVCKFGLACKYDHS 366 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.1E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.901 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-7 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 96 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.361 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 301 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 303 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-6 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-6 | 343 | 366 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-5 | 344 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MERYGRATEG SQSDLSQEWT APVPEIGLEV PMWQLGLGGA DSYPERPDEA DCIYYLRTGF 60 CGYGPRCRFN HPRDRGTVIG AARPGGEYPE RVGQPVCQYY MRTGTCKFGA SCKYHHPRQG 120 GESTPVQLNY YGYPLRLGEK ECSYYVKTGQ CKFGATCKFH HPQPAGIQVP AVSLAPPIAA 180 MPTPTLHPGV HSSSVPSSQQ YGVVVARPPL LPGSYVQSPY GHVLLPSMVP FPGWSPYPAP 240 MSPVPSPNSQ PTVGSGQLYG MTPLYPGTPT YTGTYQSLPS SVGPSSSSQK EYSLPERPGQ 300 PECQHYMRTG DCKFGSSCRY HHPPELVASK TNSSIGLPLR PGAPPCVHYA QRGVCKFGLA 360 CKYDHSLGTL SYSSSASSLA DMQVAPYPVG SSIGTLAPSS SSSELRPEFI SGSSKDPVSS 420 RMSSSMSTSS GSVGSTFSKS EPIPHLTIEQ SAQGSCPSTG SSSGGTGARS SN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840631.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
Swissprot | Q6NPN3 | 1e-167 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A2I4G9R4 | 0.0 | A0A2I4G9R4_JUGRE; zinc finger CCCH domain-containing protein 58-like | ||||
STRING | EMJ24004 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-132 | C3H family protein |
Publications ? help Back to Top | |||
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