PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003264-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 530aa    MW: 57438.2 Da    PI: 8.5512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003264-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-14344398555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++s    +      +Ka++L +++eY+k+Lq
  WALNUT_00003264-RA 344 HNQSERKRRDKINQRMKTLQKLVPNSSkvsiSCIIAQTDKASMLDEVIEYLKQLQ 398
                         9************************8889997777889****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17337412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-17337408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939339397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11344398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.45E-16344402No hitNo description
SMARTSM003532.0E-15345403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MKPSSKIKNK QKKYIPFPPC TPTQPLLPAT PPPPKMSQCV PSWDFDDNRN PNPARLSLRS  60
HSNSNPDSTM LDYEVAELTW ENGQLAMHGL GPPRVPAKPT AATTTTNTNP PASKYTTWEK  120
PRASGTLESI VNQATALPAM RKAVPFDGSD DLVPWFEHHH HRVALAAAAT ASATMTMDAL  180
VPCSNRTSEV EQATQGRVVD PLATCVVGCS THVGSCSGAA ATTQDKDNDV LFTGKRAGEA  240
RVTAEWSSRD QSCTGSATCG MDSHQMTIDT CERDRGLGFT STSLGSAENT SSHGKPFTKT  300
TTTADDHDSV CHSSPPREAG DQDKKKGTGK SSVSTKRSRA AAIHNQSERK RRDKINQRMK  360
TLQKLVPNSS KVSISCIIAQ TDKASMLDEV IEYLKQLQAQ VQMMSRMNMH PMMLPMTMQQ  420
LPMSMMAPMG MGMGMGIGIG MGMDMNTINR SNMAGISPVL HPTAFMPITS WDGSSDRIQA  480
TSGAVMPDPL STFLACQPQP MTMDAYSRMA AMYQQQHQHQ HQPPPSSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352ERKRRD
2348353RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894232e-36KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853938.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-107UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2I4HCP30.0A0A2I4HCP3_JUGRE; transcription factor UNE10 isoform X1
STRINGXP_002511647.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]