PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002967-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 546aa    MW: 60677.3 Da    PI: 4.7466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002967-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4455.2e-1361775462374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L +cA+a++++d+  a++l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e +   s+e l+++++++e++P++k
  WALNUT_00002967-RA 177 KDVLCACAKAIADNDMYTAEWLMSELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYNALRCKEPA---SAELLSYMHFLYEICPFFK 264
                         689*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f+++ aN aI ea++ e+r+HiiDf+i qG QW++L+q La+Rp+gpp++RiTg+++ +s   +      +g+rL+++Ae+++vpfefn+ 
  WALNUT_00002967-RA 265 FGYMSANGAIAEAMKDENRIHIIDFQIAQGSQWITLIQGLAARPGGPPQIRITGIDDTTSAyaRGGGPDIVGKRLSRLAESCKVPFEFNA- 354
                         *********************************************************998888888999*********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         v  +  ++el +L v+pgEa+aVn+++ lh+++desvs++++rd++L+l+kslsP+vv++veqe+++n+++F++rfle+l+yy+a+f+s++
  WALNUT_00002967-RA 355 VGISGPEVELGDLGVRPGEAIAVNFAFVLHHMPDESVSSQNHRDRILRLIKSLSPEVVTLVEQESNTNTAPFFNRFLETLDYYTAIFESID 445
                         688899************************************************************************************* PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++lpre++eri+vE+++l+r+ivn++acegaer+erhe l+kWr+r+ +aGF+p+pls+ +++++k+ll+++ ++ y++ee++g+l+lgW+
  WALNUT_00002967-RA 446 VTLPREHRERINVEQHCLARDIVNIIACEGAERVERHELLGKWRSRFIMAGFTPYPLSSLVNATIKTLLENYCEK-YTLEERDGALFLGWM 535
                         *************************************************************************55.*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r Lv+ +aWr
  WALNUT_00002967-RA 536 NRVLVTSCAWR 546
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.349150527IPR005202Transcription factor GRAS
PfamPF035141.8E-133177546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQPSQKQSIS TGSHRFYEQP VEEPVSYFVP PNQNFDPHLC SDDNSQGTHP LVPTSENYCT  60
LESSSGTSGY FVQNSPSTVS FSPNGSPASQ PDSQSFPTDQ HQSPDNTYGS PVSVSCLSDD  120
VDDLRHKIRE LETAMLGPDL DTLDRYSKTN PVGPNQIPSE AEKWKQMMEI ISGGDLKDVL  180
CACAKAIADN DMYTAEWLMS ELRQMVSVSG EPIQRLGAYM LEGLVARLAS SGSSIYNALR  240
CKEPASAELL SYMHFLYEIC PFFKFGYMSA NGAIAEAMKD ENRIHIIDFQ IAQGSQWITL  300
IQGLAARPGG PPQIRITGID DTTSAYARGG GPDIVGKRLS RLAESCKVPF EFNAVGISGP  360
EVELGDLGVR PGEAIAVNFA FVLHHMPDES VSSQNHRDRI LRLIKSLSPE VVTLVEQESN  420
TNTAPFFNRF LETLDYYTAI FESIDVTLPR EHRERINVEQ HCLARDIVNI IACEGAERVE  480
RHELLGKWRS RFIMAGFTPY PLSSLVNATI KTLLENYCEK YTLEERDGAL FLGWMNRVLV  540
TSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-611805468375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812730.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812737.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812742.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812749.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4E0170.0A0A2I4E017_JUGRE; scarecrow-like protein 21
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]