PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002897-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 501aa    MW: 54196 Da    PI: 7.2709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002897-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-164390148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +l ++v+++G g+W+++ r  g+ R++k+c++rw ++l
  WALNUT_00002897-RA 43 KGPWTAVEDAILTEYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 90
                        79******************************************9986 PP
2Myb_DNA-binding51.13e-1696139146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  WALNUT_00002897-RA  96 KGAFSPEEERLILQLHAKYGNK-WARMAARLP-GRTDNEIKNYWNT 139
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9283890IPR017930Myb domain
SuperFamilySSF466897.49E-3041137IPR009057Homeodomain-like
SMARTSM007171.6E-134292IPR001005SANT/Myb domain
PfamPF002493.9E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-234497IPR009057Homeodomain-like
CDDcd001675.37E-114590No hitNo description
PROSITE profilePS5129426.20591145IPR017930Myb domain
SMARTSM007173.3E-1795143IPR001005SANT/Myb domain
PfamPF002491.1E-1596139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2598144IPR009057Homeodomain-like
CDDcd001676.78E-1398139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MTPGSNNNTP GAQNEGVGST ESSAGVGGAE GNGGHGGGVT LKKGPWTAVE DAILTEYVRK  60
HGEGNWNAVQ RNSGLARCGK SCRLRWANHL RPNLKKGAFS PEEERLILQL HAKYGNKWAR  120
MAARLPGRTD NEIKNYWNTR VKRRQRQGLP LYPPDIQPSS QSQSQSYSQP TTPASSTPSA  180
PSTPTNPNSP SFHFHSHHQY PSLTLSPTPP PHSPSHQPLS PQPFTTGTSF PLFDPTTTSS  240
SSFTFQRPPP ILGTPIRFKR YRDSTGFSLP IPSTTQSNKA PLGQLALTQL PDMASFQFPV  300
TFSHSSPQFP RTQLELDQMV SPVFAYSVKQ ELPSNQLSSH PSQAEMSEIT IDTKVNAAAS  360
QGSGNGLLED LLEEAQALAA SSHGLKTQSF LEEKRVFEGF KLGSSSTHCS SGVKPQEESG  420
VLINSMNEDL SKLFNGIPSN MQVPDWYSDS GEISNGQSSG VTDDNIGIDM QHIASFFPLG  480
ATTDHSRTPD ACSWDNLPGI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29411445107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811701.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A2I4DX230.0A0A2I4DX23_JUGRE; transcription factor MYB86
STRINGXP_008385966.11e-153(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-69myb domain protein 101