PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002805-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 353aa MW: 39557.6 Da PI: 7.867

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002805-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	47	100	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ R WALNUT_00002805-RA 47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQVQR 100 79*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.061	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-28	45	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-14	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-21	47	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	49	98	IPR001005	SANT/Myb domain
Pfam	PF14379	9.1E-12	91	123	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MYHHHQHQGK NTHSSSRLMS TPPERHLFLQ GGNSPGDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQVQR HLQLRIEAQG KYLQAVFEKA 120 QETLGRQNIG TVGLEAAKMQ LSELVSKVSN QCLNSTFSEL KELQGLCPQQ ALVTQPTDCS 180 MDSCLTSCEG SQKDQEMHNR GMGMRPYSVS AFLEQKEMSD GHMIQKTELK WSEDLKQSML 240 HSSMVKDGER RMFPVDRSSN DLSMRIGFQG EKGNGSNSCF GGRFQGRDLE DNFLDRINNK 300 AESSKLENEK NSQRYRVPYF ASKLDLNARD ENDVAAAAAG SCKQFDLNGF SWS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MYHHHQHQGK NTHSSSRLMS TPPERHLFLQ GGNSPGDSGL VLSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQVQR HLQLRIEAQG KYLQAVFEKA  120
QETLGRQNIG TVGLEAAKMQ LSELVSKVSN QCLNSTFSEL KELQGLCPQQ ALVTQPTDCS  180
MDSCLTSCEG SQKDQEMHNR GMGMRPYSVS AFLEQKEMSD GHMIQKTELK WSEDLKQSML  240
HSSMVKDGER RMFPVDRSSN DLSMRIGFQG EKGNGSNSCF GGRFQGRDLE DNFLDRINNK  300
AESSKLENEK NSQRYRVPYF ASKLDLNARD ENDVAAAAAG SCKQFDLNGF SWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826788.1	0.0	PREDICTED: myb-related protein 2-like
Refseq	XP_018826796.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	7e-88	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2I4F559	0.0	A0A2I4F559_JUGRE; myb-related protein 2-like
STRING	EMJ04158	1e-148	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-108	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]