PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002633-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 276aa    MW: 29245.1 Da    PI: 8.8705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002633-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.91.9e-0983108227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ +     Ck+Gd+C+FaHg+
  WALNUT_00002633-RA  83 KTRLCNKYKTAEGCKFGDKCHFAHGE 108
                         8***********************96 PP

2zf-CCCH35.61.6e-11244267226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         kt+lC++f + GtC +G+rC+FaHg
  WALNUT_00002633-RA 244 KTKLCDNFTK-GTCTFGERCHFAHG 267
                         9*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0421442IPR000571Zinc finger, CCCH-type
SMARTSM003561.71441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-61540IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-71639IPR000571Zinc finger, CCCH-type
PfamPF146081.62239No hitNo description
SuperFamilySSF902291.7E-879112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-1481113IPR000571Zinc finger, CCCH-type
SMARTSM003560.001381108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.48881109IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-683108IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.14E-15143224IPR004088K Homology domain, type 1
SMARTSM003221.1E-10151221IPR004087K Homology domain
PROSITE profilePS5008413.565152216IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.2E-16153222IPR004088K Homology domain, type 1
CDDcd001051.52E-13154217No hitNo description
PfamPF000136.6E-10154218IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.4E-16239274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-9242272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108242269IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7242268IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9244267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSATEVESFT TGIGSKSKPC TKFFSTSGCP FGEGCHFLHY VPGGIKVASQ MMNLGGNPAH  60
PPAARSSALP PLFPDSSSPT TVKTRLCNKY KTAEGCKFGD KCHFAHGEWE LGKPTATSYE  120
DPRAMGPISG RMGGRVEPPP QSHPAAASFG AFATTKLSVD ASLSGAIIGK NGVNSKHICR  180
VTGAKLSIRE HESDPTKRNI ELEGTFDQIN QATTMVQELI SNVRSTSGPP GRNPAGTTPS  240
GNLKTKLCDN FTKGTCTFGE RCHFAHGAEE LRRPGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936049e-40FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834630.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-104C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4FSK00.0A0A2I4FSK0_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGcassava4.1_012715m1e-152(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-56C3H family protein