PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002565-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB

Protein Properties

Length: 354aa MW: 39585 Da PI: 7.0292

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002565-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.6e-19	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl WALNUT_00002565-RA 33 KGPWTPEEDQQLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 80 79********************************************97 PP
2	Myb_DNA-binding	54.2	3.3e-17	86	131	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l WALNUT_00002565-RA 86 RGKFSEEEEQTILNLHAVLGNK-WSAIASRLP-GRTDNEIKNFWNTHL 131 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-26	25	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.959	28	80	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-32	30	127	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-16	32	82	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-18	33	80	IPR001005	SANT/Myb domain
CDD	cd00167	1.71E-12	35	80	No hit	No description
PROSITE profile	PS51294	26.602	81	135	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-27	84	136	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-16	85	133	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	86	131	IPR001005	SANT/Myb domain
CDD	cd00167	4.69E-12	88	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYIYIWVGQQ ILKRKKEPKM GRPPSCDENG LKKGPWTPEE DQQLVKYIQK HGHGSWRALP 60 KLAGLNRCGK SCRLRWTNYL RPDIKRGKFS EEEEQTILNL HAVLGNKWSA IASRLPGRTD 120 NEIKNFWNTH LKKKLIHMGF DPMTHRPRTD ILSSLPHLIA LANLKELIDH HSWEEQALRL 180 QSAEAVQMAR LQYLQCLLQP LPSNGSTTAN SINSFTEMEI INHIKDNLGL GASHLDTPTP 240 SLGTSTGLQP GHDAIPFSHL PDLQIPCNDY QTPLNKENSV QAPEFTALIQ GESSLNSPWL 300 ASSSSTPSPS VVPPMTETSL NNLGDACSTS SYGEAAPSIW PDLLLEDLLF HEIS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYIYIWVGQQ ILKRKKEPKM GRPPSCDENG LKKGPWTPEE DQQLVKYIQK HGHGSWRALP  60
KLAGLNRCGK SCRLRWTNYL RPDIKRGKFS EEEEQTILNL HAVLGNKWSA IASRLPGRTD  120
NEIKNFWNTH LKKKLIHMGF DPMTHRPRTD ILSSLPHLIA LANLKELIDH HSWEEQALRL  180
QSAEAVQMAR LQYLQCLLQP LPSNGSTTAN SINSFTEMEI INHIKDNLGL GASHLDTPTP  240
SLGTSTGLQP GHDAIPFSHL PDLQIPCNDY QTPLNKENSV QAPEFTALIQ GESSLNSPWL  300
ASSSSTPSPS VVPPMTETSL NNLGDACSTS SYGEAAPSIW PDLLLEDLLF HEIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-30	31	135	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834458.1	0.0	PREDICTED: transcription factor MYB39-like isoform X2
Swissprot	Q9S9Z2	1e-101	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2I4FS46	0.0	A0A2I4FS46_JUGRE; transcription factor MYB39-like isoform X2
STRING	POPTR_0005s07590.1	1e-156	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-94	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]