PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002518-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 414aa    MW: 46321.9 Da    PI: 7.295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002518-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31001.4e-3191195199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  WALNUT_00002518-RA  91 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 181
                         89***************************966778999*************************************************6557 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  WALNUT_00002518-RA 182 EhGRDHLYIDWRRR 195
                         77888899999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4283199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-2988196IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-2789190No hitNo description
PfamPF023623.9E-2991195IPR003340B3 DNA binding domain
SMARTSM010191.5E-2391196IPR003340B3 DNA binding domain
PROSITE profilePS5086314.64991196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDLGPHGEGF SCDEAHEQMV GGKLPFSYYS SSSPYEAASD ANKLHELVMI DSSPRNEDDD  60
VRRGDSQDDG VGAGSTTTGR GINIMEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD  120
SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDIVSFQRGV  180
GEHGRDHLYI DWRRRPDAPD PVASLQNLPH HYFSFHRSIP PSAWSINSPN LLMRPRDHLH  240
LSSQQLNMNN NNVNLHHPYN RNSYGASSAY CNYMVNPSLI YMRSTAATAA AQHQYQQQQQ  300
QQQLVQAHIG VEPPPMVFES VPVVQGKVAA KRLRLFGVNM DCPISESDAC DVIFSSTTIA  360
PHATMALQPN SQLPSPSQSA LQLRPCNGTT LPITVPTDFL NKGKKASMSL DFGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66841961114B3 domain-containing transcription factor NGA1
5os9_B2e-66841961114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822636.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR96e-80Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2I4ETC40.0A0A2I4ETC4_JUGRE; B3 domain-containing protein Os03g0120900-like
STRINGGorai.008G261100.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]