PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002472-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 222aa MW: 25537.1 Da PI: 9.5335 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.5e-27 | 84 | 172 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ WALNUT_00002472-RA 84 FYDDYARRVGFVMRVMSCRRSERDGKILARRLGCNKEGHCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 172 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-24 | 84 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLDDLPKKLA LICTVEKKRI QRKSFIALVG FSEEKKIPII PLDPDEQAST VESSVGAELF 60 YERDMILEPF EGMEFESEDA AKIFYDDYAR RVGFVMRVMS CRRSERDGKI LARRLGCNKE 120 GHCVSIRGKF GPVRKPRPST REGCKAMIHV KYDKSGKWVI TKFVKDHNHP LVVSPREARQ 180 TMVSFLISYV IKCCSIFLII SLHYLLRSLY LVLLGLFTYP HA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822494.1 | 1e-101 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2I4ESX5 | 1e-100 | A0A2I4ESX5_JUGRE; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_008222477.1 | 2e-86 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 7e-77 | FAR1 family protein |