PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002471-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 24291.5 Da PI: 9.2069 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.7 | 3.3e-17 | 56 | 133 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk+vGF +r+ +s+ks+r+++i++r + Cs ++++ + + C+a++ +k+ek g+w+v k++ +HnH+l+ WALNUT_00002471-RA 56 FYDEYAKRVGFITRVLSSRKSERDRSIISRGLGCSGRSVNRKRGGQ-----------QEVCTATILLKREKPGRWVVRKFVRDHNHPLV 133 9**********************************99888887766...........788***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-14 | 56 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MICQLATCAT VDMEVDDGNE RIETSAEGES SIRRVETDQE PYEGMPFESE EAARAFYDEY 60 AKRVGFITRV LSSRKSERDR SIISRGLGCS GRSVNRKRGG QQEVCTATIL LKREKPGRWV 120 VRKFVRDHNH PLVGQFRKTR RTFDEKDKKI LELTAELRVK KRLSAAYREQ LLAFMKDIEG 180 HNEHLSTKVQ LVLDNLSEFE AKRKEVSDHR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822587.1 | 1e-152 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
TrEMBL | A0A2I4ET53 | 1e-150 | A0A2I4ET53_JUGRE; protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
STRING | XP_009764129.1 | 4e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-55 | FAR1 family protein |