PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002455-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SBP

Protein Properties

Length: 1047aa MW: 116322 Da PI: 8.101

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002455-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.8	1.8e-39	144	221	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk++++lv++++qrfCqqCsrfh ls fDe+krsCrrrL++hn+rrrk+q+ WALNUT_00002455-RA 144 MCQVDNCKEDLSNAKDYHRRHKVCEAHSKSTKALVAKQMQRFCQQCSRFHLLSAFDEGKRSCRRRLDGHNRRRRKTQQ 221 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-33	138	206	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.299	142	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-36	143	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-28	145	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.37E-5	812	935	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.14E-4	842	938	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MEEAGPQVAS PIFIHPQTLQ SRFSMAKKRD LLNVQAKPPL MTPTTELQNH IMDDWNAKGW 60 DWDSVRFVAK PLDLRLGTPA TAAAAAEQKK KESSRSVSVE EEDESLRLNL GGGLKFVEEE 120 QEPQSRPNKR VRSGSPGTGG NYPMCQVDNC KEDLSNAKDY HRRHKVCEAH SKSTKALVAK 180 QMQRFCQQCS RFHLLSAFDE GKRSCRRRLD GHNRRRRKTQ QEDVTGRLLL PGNRDNTASN 240 ANLDVVNLLA AIARTQGKNE DKTINCSSIP DRDHLVQILS KINSLPLPPD LVAKLPNLGS 300 LHGKLPGHTS LEHQIKLNGN ACSPSTKDLL AVLSAPLATS APDALTILSQ KSSHSSDSEK 360 TKITHSDQTT LNLQKRPPLE FPSVGGERIS SGYQSPMEDS DGQVQEVHVN LPLQLFGSSP 420 EDDSPPKLAS SRKYFSSDSS NPIDGRSPSS SPPTVQKLLP IQRKRETLKP ENMTINKGLN 480 ANVVASRTGD SKRPFDLFRG SNTGAEPGSF QSFPYQAGYI SSGSDHSPPS LNSDAQDRTG 540 RIIFKLFDKD PSHFPETLRT QISCWLSNRP SEMESYIRPG CVVLSVYVSM PSAAWEQFEQ 600 NLLERVNTLV QSSDSDFWRS GRFIINTGRQ LASHKDGKIH LCKSWRTWSS PELILVSPLA 660 VVDGQETSLL LKGRNLSNPG AKIHCTYMGG YISKEVSEST CQGTSYDKIN LGNGFPVIVA 720 NSTICEELRL LESEFDLEAR EYDDISEENT NDFRRPKSRE EVLHFLNELG WLFQRIGNTS 780 MLGNPDYSLC RLKFLLTFSV ERDCCALVRK LLDILVERNF DGNVLTKESL ETLSEIQLLN 840 RAVKRRCRKM VDVLIHYSIT SSNDASKKYI FPPNVVGPGG VTPLHLAACT SGSDDLIDAL 900 TSDPLEIGLN CWTTLLDAIG QSPYDYAMMR HNHSYNKLVA RKLTDRENGQ VSVMVTSEIE 960 QARLSMEPEH QISTQVKQLR SCARCAVVAR KHNMRVSASQ GLLQRPFIHS MLAIAAVCVC 1020 VCLFLRGSPD IGSVAPFKWE NLGFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MEEAGPQVAS PIFIHPQTLQ SRFSMAKKRD LLNVQAKPPL MTPTTELQNH IMDDWNAKGW  60
DWDSVRFVAK PLDLRLGTPA TAAAAAEQKK KESSRSVSVE EEDESLRLNL GGGLKFVEEE  120
QEPQSRPNKR VRSGSPGTGG NYPMCQVDNC KEDLSNAKDY HRRHKVCEAH SKSTKALVAK  180
QMQRFCQQCS RFHLLSAFDE GKRSCRRRLD GHNRRRRKTQ QEDVTGRLLL PGNRDNTASN  240
ANLDVVNLLA AIARTQGKNE DKTINCSSIP DRDHLVQILS KINSLPLPPD LVAKLPNLGS  300
LHGKLPGHTS LEHQIKLNGN ACSPSTKDLL AVLSAPLATS APDALTILSQ KSSHSSDSEK  360
TKITHSDQTT LNLQKRPPLE FPSVGGERIS SGYQSPMEDS DGQVQEVHVN LPLQLFGSSP  420
EDDSPPKLAS SRKYFSSDSS NPIDGRSPSS SPPTVQKLLP IQRKRETLKP ENMTINKGLN  480
ANVVASRTGD SKRPFDLFRG SNTGAEPGSF QSFPYQAGYI SSGSDHSPPS LNSDAQDRTG  540
RIIFKLFDKD PSHFPETLRT QISCWLSNRP SEMESYIRPG CVVLSVYVSM PSAAWEQFEQ  600
NLLERVNTLV QSSDSDFWRS GRFIINTGRQ LASHKDGKIH LCKSWRTWSS PELILVSPLA  660
VVDGQETSLL LKGRNLSNPG AKIHCTYMGG YISKEVSEST CQGTSYDKIN LGNGFPVIVA  720
NSTICEELRL LESEFDLEAR EYDDISEENT NDFRRPKSRE EVLHFLNELG WLFQRIGNTS  780
MLGNPDYSLC RLKFLLTFSV ERDCCALVRK LLDILVERNF DGNVLTKESL ETLSEIQLLN  840
RAVKRRCRKM VDVLIHYSIT SSNDASKKYI FPPNVVGPGG VTPLHLAACT SGSDDLIDAL  900
TSDPLEIGLN CWTTLLDAIG QSPYDYAMMR HNHSYNKLVA RKLTDRENGQ VSVMVTSEIE  960
QARLSMEPEH QISTQVKQLR SCARCAVVAR KHNMRVSASQ GLLQRPFIHS MLAIAAVCVC  1020
VCLFLRGSPD IGSVAPFKWE NLGFGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-28	134	218	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	840	845	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018832978.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2I4FMX4	0.0	A0A2I4FMX4_JUGRE; squamosa promoter-binding-like protein 14
STRING	XP_008237887.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]