PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002413-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 558aa    MW: 61621.4 Da    PI: 6.5105
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002413-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.32e-42154231178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv++C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  WALNUT_00002413-RA 154 ICQVDNCGADLSNAKDYHRRHKVCEMHSKASKALVGNIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 231
                         5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-34148216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.342152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-39153235IPR004333Transcription factor, SBP-box
PfamPF031101.5E-30155228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDARFGGEDH HFFAMRTADL RAMGKRSLEW DLNEWKWDGH LFTASPMNLV PSGSMDQQFS  60
PLGSGIPPTG GSSNSSSSCS DEVNLGIEKV KWELEKRRRV NLLDEGNLND EEAGTLALKL  120
GGQGYQVPER EVGNWEGMSG KKTKLVGGTS NRAICQVDNC GADLSNAKDY HRRHKVCEMH  180
SKASKALVGN IMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PDSVVNGSTL  240
NDDQTSGYLL ISLLRILSNM HSNRSDQATD QDLLTHLLRS LANQSGEHRR KNIPAIMQDP  300
PSSLNAPNSI NAGNSHGNSE LVSTLLSNGT EAPLRPPKQL HSIPVSEIPR QGRSVDDARS  360
EDIQTASSTK PCSLNSPPAY SEVGDGTAQQ IKMNNFDLND IYIDSDDGME DIERSPVPAN  420
TGTSSLDSHQ SSPPQTSGHS DSVSTQSPAS SSGDAQSRTD RIVFKLFGKE PSDFPLVLRA  480
QILDWLSHSP TDIESYIRPG CIILTIYLHQ AEAAWEELSN NLSSSLKRLL DVSDDSFWRT  540
GWVYIRVQHQ IAFVNNGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-34148228484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832891.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P51e-170SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2I4FMK20.0A0A2I4FMK2_JUGRE; squamosa promoter-binding-like protein 1
STRINGPOPTR_0002s18970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.11e-163squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]