PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002350-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28339.1 Da PI: 6.1335 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.5 | 8.2e-27 | 81 | 171 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YAk++GF++r+++ ++s +n+ i+ r+fvCs+eg+r+ +++ +++ +++ tr gCka++++ ++ gkw+vtk++ eHnH+ WALNUT_00002350-RA 81 DFYYDYAKQMGFTIRTNRIRHSLKNTAIIGRDFVCSREGFRAAKHTLrKDR--VlpPKPITREGCKAMIRLAARDGGKWVVTKFVREHNHK 169 6*****************************************999882233..24599********************************* PP FAR1 89 la 90 l+ WALNUT_00002350-RA 170 LM 171 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-24 | 81 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAGIAGVHDL LGSDDGVSDE ETVENSGELE ATEDGLLQHC YLNSVSNDHL SLIEPSRGDL 60 TVESLEPYIG MAFPSLDDAR DFYYDYAKQM GFTIRTNRIR HSLKNTAIIG RDFVCSREGF 120 RAAKHTLRKD RVLPPKPITR EGCKAMIRLA ARDGGKWVVT KFVREHNHKL MTHCKFSGEL 180 PIVNILSEEE KDKKIQDLHD ELRHERKRSS AFREQLCLIL KDIEEHAQFM SLRVEDIANS 240 MKEIELGNT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806145.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_018806152.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_018806156.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_018806162.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A2I4DG74 | 0.0 | A0A2I4DG74_JUGRE; protein FAR1-RELATED SEQUENCE 7-like | ||||
STRING | XP_002533358.1 | 1e-130 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-42 | FAR1 family protein |