PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002349-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29497.2 Da PI: 6.0634 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82 | 9.9e-26 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY Y+++ GF vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ kw +tk+++eHnH+l WALNUT_00002349-RA 78 DFYVVYGRRSGFIVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPITREGCQAMIRLALRDGTKWIITKFVKEHNHKL 167 6******************************************99883332.244899********************************9 PP FAR1 90 a 90 + WALNUT_00002349-RA 168 M 168 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MIDHQSLQGF DLDESELDMQ DETYEKDGMI EDGLPNNLNS CASEADTISE QSVEDLPIAE 60 ALEPYIGMEF NSRDEARDFY VVYGRRSGFI VRIHHNRRSR VNNQVIGQDF VCSKEGFRAK 120 KYVHRKDRVL PPPPITREGC QAMIRLALRD GTKWIITKFV KEHNHKLMSP SKVPCRGSGK 180 HLVSEDEKDK RIRELSLELY NERQKCKRRC AAYEEQLKMI LKDLEKHTEH ISKTVADVVQ 240 SIKDIEDERS ESDSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806129.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_018806137.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2I4DG52 | 0.0 | A0A2I4DG52_JUGRE; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009347669.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-44 | FAR1 family protein |