PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002348-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 267aa MW: 30801.7 Da PI: 8.1451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002348-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.5	2.7e-24	90	181	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ +++++GF++r++++++s ++++i+ r+fvCskeg+r ++ ++++ +r++tr gC+a++++ ++ gkw+++ +e++HnHel+ WALNUT_00002348-RA 90 EFYEMHGRHLGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRIGKHANRKNGVLpSRQTTRGGCNAMMRIAAKDGGKWVIYGFEKKHNHELN 180 6**************************************9998883333324999******************************97 PP FAR1 91 p 91 p WALNUT_00002348-RA 181 P 181 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-21	90	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MLLNSTNLVS CFGRLIMAST SGQGYKLNRN YRCWLTENFD GHDTADDDLS DNLDGNDDMI 60 QPSLQTFPST LVRLEPFVGM QFESAEDARE FYEMHGRHLG FTIRNNRTRR SLKDNSIIGR 120 EFVCSKEGFR IGKHANRKNG VLPSRQTTRG GCNAMMRIAA KDGGKWVIYG FEKKHNHELN 180 PSKVPPRRSH RLAFCEDEKD LKIRELTMEL HRERKKSAAY QQQLQLVLKY IEDHTQKLSL 240 KVEVAANNMR ELESEEQDSA RSEQCVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806083.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_018806092.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2I4DG15	0.0	A0A2I4DG15_JUGRE; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	VIT_05s0102g00400.t01	1e-140	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-46	FAR1 family protein