PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002302-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 391aa    MW: 43186.1 Da    PI: 8.6581
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002302-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.54.3e-29551643102
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k  i++l+ ++ ++   + + +++ s++++s++     
  WALNUT_00002302-RA  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKFDIDKLPPLPIPQG--FGQFHHQLSHHHESNAspssf 143
                         79*************************************************************66666..333344444444444411222 PP

                 TCP  89 ......kaaksaa.kskksqk 102
                               +a++s+  k  ++q+
  WALNUT_00002302-RA 144 hapnlfDANSSTFiKDGEDQR 164
                         234444333333322222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.58156114IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2756168IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MISNSREKDI QAAKQEDGSR NDIGKLSKVG ASSSSRQWSA GFRNPRIVRV SRSFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLDATKFD IDKLPPLPIP  120
QGFGQFHHQL SHHHESNASP SSFHAPNLFD ANSSTFIKDG EDQRTTSVMA AKTKADWDPM  180
DSALRLKNKE FERSGSLLLD QVGDKGKWIK TNHEEDEIQY GIGTTSSSTT GYGAQISAHN  240
FFPMPNHSSL PSLLNNAMAY NSYYQSDQPS ALSLSQFGGH GSLFPSQIDH HPHSTSSAMP  300
LPSGSQLFFC PSSTTPALFT PYPSYITTPL IESDPRQFSH IQLLNSSSSQ HHVLPHPLIS  360
SLHSVGSPLK PFPGNENPKL QLPQSHESKL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1861115155Putative transcription factor PCF6
5zkt_B7e-1861115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828186.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A2I4F9590.0A0A2I4F959_JUGRE; transcription factor TCP5
STRINGEOY220941e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5