PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001886-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 565aa MW: 61710.8 Da PI: 9.109 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.1e-36 | 184 | 264 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++ + s++++++ WALNUT_00001886-RA 184 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWNPTTS----TTSQQQQHH 264 79**************************************************************66555222....222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-31 | 184 | 261 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 186 | 244 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MGPFGRSRSS RIRFQCGGSC TSNKNRVGSK GRVKNHRPTK KKRAAPLKAG RGKAQGPESG 60 SSKESSSSSP SKPKEGEEED QDSPSQQKEY HHHQQQEASF YFQHHYPHQD QHHPQHLYGG 120 LDAQPQPPQP PKKRSYFTPP STCIEYARQM GESHHQATTS SRLGIRSGGG EIVEVQGGHI 180 VRSTGRKDRH SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKKAKAA 240 IDELAELPAW NPTTSTTSQQ QQHHLPPQII DENENAIAIH RSRAVDAIAS GSRTATVGCD 300 GGRVSEINMQ NLQPPQMGEN PNNSSSFLPP SLDSDSIADT IKSFFPTGAS AETAHSSPPI 360 HFQNYPPDLL SRTSSQSQDL RLSLQSFHDP IDLLHQHQHQ AQTHHNQNEP VLFFSGTTPL 420 GFDGSSAGWP EHHNPAEIGR FQRMIAWNPA GAETGSGSSG GSGGFIFNSP PPPPFLGQNQ 480 FFPQRGPLQS SNNTPSIRAW IDPSIGTVSA HHHQLPPSIH QPSMSGIGFA SGGFSGFRIP 540 ARIQGEEEHD GISDKPSSAS SDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 191 | 244 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 191 | 244 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822642.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_018822651.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-110 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2I4ETD9 | 0.0 | A0A2I4ETD9_JUGRE; transcription factor TCP4-like | ||||
STRING | XP_004137216.1 | 1e-179 | (Cucumis sativus) | ||||
STRING | XP_004172687.1 | 1e-179 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-63 | TCP family protein |