PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001840-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 59aa MW: 6833.02 Da PI: 10.6814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35 | 2.5e-11 | 20 | 56 | 40 | 76 |
ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLke 76 d+s r ++ ++y+k+s+++v+t+GW++Fv++n Lk WALNUT_00001840-RA 20 DRSMRICKFLHCYWKSSQSFVFTRGWNRFVNENPLKP 56 688999***************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.04E-9 | 19 | 55 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-9 | 20 | 55 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.9E-9 | 20 | 56 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MHKGPGTMEA ARVLLTLSCD RSMRICKFLH CYWKSSQSFV FTRGWNRFVN ENPLKPKAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850320.1 | 4e-14 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_018850321.1 | 4e-14 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_018850322.1 | 4e-14 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_018850323.1 | 4e-14 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_018850324.1 | 4e-14 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 7e-16 | RAV family protein |