PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001753-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 258aa MW: 29860.4 Da PI: 5.9516

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001753-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1e-54	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yLk+k++ +++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd WALNUT_00001753-RA 6 LPPGFRFHPTDEELVNYYLKRKINCQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGYRTNRATRAGYWKSTGKD 95 79**************************.99**********84335556888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++v++ +++ +g+kktLv+y+grap+g +tdWvmheyrle WALNUT_00001753-RA 96 RRVTC-QNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLE 134 *.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.171	6	156	IPR003441	NAC domain
Pfam	PF02365	9.2E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKINC QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGYRT NRATRAGYWK STGKDRRVTC QNRPIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLEDKEFED TSGIQDTYAL CRVFKKNGIC SEIDQEQAPG QSSSLSLVLE 180 SSQAGHVMND HNELTMSPDV TMASSSCCMD HHHHHHHQEE KDDSWMQFIK DDAWYCSSNN 240 VATGTTGGEE VCPMAFTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-54	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847199	2e-43	KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018823426.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	4e-86	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2I4EVJ6	0.0	A0A2I4EVJ6_JUGRE; NAC domain-containing protein 86-like
STRING	POPTR_0015s05450.1	1e-137	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-124	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]