PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001735-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 192aa MW: 21414.8 Da PI: 7.0739 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.7 | 5.8e-28 | 14 | 64 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + ++++ l+CaACgCHRnFHR+ + WALNUT_00001735-RA 14 DVYRECLRNHAASLGSYATDGCGEFTLD---DSSPGCLQCAACGCHRNFHRKVT 64 58*************************8...6789*****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-23 | 15 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-22 | 16 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 16 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.726 | 16 | 63 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-27 | 109 | 176 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.29E-14 | 112 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.9E-27 | 117 | 175 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEMEMEMETE NANDVYRECL RNHAASLGSY ATDGCGEFTL DDSSPGCLQC AACGCHRNFH 60 RKVTYVPTHV RGGGASYSSR GGREVPETTA ELMDYTGGGR QAVMVESGEA AERNFSKKRF 120 RTKFTQDQKE KMLAFAEKLE WKLQRKDLDD EIERFCRGVG VSRQVFKVWM HNHKNASSSS 180 SASTGNASSL TQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 118 | 180 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823409.1 | 1e-144 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2I4EVI3 | 1e-142 | A0A2I4EVI3_JUGRE; zinc-finger homeodomain protein 11-like | ||||
STRING | XP_004137520.1 | 6e-83 | (Cucumis sativus) | ||||
STRING | XP_004174113.1 | 6e-83 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-40 | homeobox protein 22 |