PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001730-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 422aa MW: 47307.7 Da PI: 8.7095

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001730-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3.1e-31	233	286	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ ve LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ WALNUT_00001730-RA 233 PRMRWTSSLHSRFVHSVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 286 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.38E-14	230	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-27	231	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-23	233	286	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MFRKDILEEP SNLHPIPDLS LHISPPKSAP SSICTAAHEG DLSFDVWRKD DHDKLKSHSD 60 NSIRASTQLA ETGFSLSNPK SALEAESQWR RNFISSNSTG GEEVLLQARH RNRGIPVPDV 120 PEGIKAIKGI PVFSTLDHSS KFCFNQMAAY PSFNASTRSS AAIRPYGIEG SEPISRYNGI 180 TMETLRTQQF HQYMQFPQHH YIGAAGASDF SNSFLRSSRF MPKLQSRKNM RAPRMRWTSS 240 LHSRFVHSVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKNT DRPAASSDGS 300 GDEDFLSTAP TLHDQNENCL LNQRRSSASN AVLEHEMGYH SNLWCNPSSR SGSWVQAASS 360 RNPDRLLRPE IYPSSQQRSG DQFDQVCDFA QSIKSRGSSL GLKNPSLEFT LGRPDWRSKE 420 HD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MFRKDILEEP SNLHPIPDLS LHISPPKSAP SSICTAAHEG DLSFDVWRKD DHDKLKSHSD  60
NSIRASTQLA ETGFSLSNPK SALEAESQWR RNFISSNSTG GEEVLLQARH RNRGIPVPDV  120
PEGIKAIKGI PVFSTLDHSS KFCFNQMAAY PSFNASTRSS AAIRPYGIEG SEPISRYNGI  180
TMETLRTQQF HQYMQFPQHH YIGAAGASDF SNSFLRSSRF MPKLQSRKNM RAPRMRWTSS  240
LHSRFVHSVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKNT DRPAASSDGS  300
GDEDFLSTAP TLHDQNENCL LNQRRSSASN AVLEHEMGYH SNLWCNPSSR SGSWVQAASS  360
RNPDRLLRPE IYPSSQQRSG DQFDQVCDFA QSIKSRGSSL GLKNPSLEFT LGRPDWRSKE  420
HD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	234	288	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	234	288	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	234	288	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	234	288	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018823651.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBL	A0A2I4EW76	0.0	A0A2I4EW76_JUGRE; transcription repressor KAN1-like isoform X1
STRING	EOY21494	1e-131	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-55	G2-like family protein