PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001614-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 421aa    MW: 46302.4 Da    PI: 7.5231
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001614-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.9e-41175252178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC++ l ++k+yhrrhkvC++hskap+v+v gleqrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk+++
  WALNUT_00001614-RA 175 RCQVEGCHTALLNVKDYHRRHKVCDIHSKAPMVVVLGLEQRFCQQCSRFHPLSEFDESKRSCRRRLAGHNERRRKSAH 252
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-34172237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.453173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38174254IPR004333Transcription factor, SBP-box
PfamPF031103.2E-32176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEIGASMVGQ ISNVERGQNG NNANIGWDIW ELSTSRWDWS SCTSSLYTPT TATSDATTLP  60
AESFSTTRQD VTASHALQFP HHHQLQYYHH NHQHHQQPSL YSGAGSHCQP DPQLMCLKLG  120
KRQYFEDTTL LANRHMAGLS SSVAGKRGKP YYGAGGVGIV GGPSSSPLLP PTVPRCQVEG  180
CHTALLNVKD YHRRHKVCDI HSKAPMVVVL GLEQRFCQQC SRFHPLSEFD ESKRSCRRRL  240
AGHNERRRKS AHDSANRNSA QGAGLLCSSS SWSTGRALSL LSSNTNSSVS PADLSSRSSA  300
ALHELIAEHR AGILARQLIL DQDWYTQSHG MEDLGETQLP RSYTLIPGQQ HQMFPEPHSC  360
NHQFHESDTH VTLDLMQASS SAFGLLSARG KSKEEAEEEC SNLCFSGIQS ISVLAGGHRD  420
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301762491184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816354.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A2I4EAD40.0A0A2I4EAD4_JUGRE; squamosa promoter-binding-like protein 7
STRINGcassava4.1_008947m1e-121(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-35squamosa promoter binding protein-like 3