PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001604-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 326aa    MW: 36478.2 Da    PI: 7.9628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001604-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-131257146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W +eEde l++ vk++G+++W++I +   + Rt+k+c++rw +
  WALNUT_00001604-RA 12 KGPWKAEEDEVLLNHVKRYGPRDWSSIRSNGLLQRTGKSCRLRWVN 57
                        79************************98776699**********87 PP
2Myb_DNA-binding42.41.6e-1368107344
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  WALNUT_00001604-RA  68 KFSLEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 107
                         799*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.158763IPR017930Myb domain
SuperFamilySSF466892.55E-289107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-21960IPR009057Homeodomain-like
SMARTSM007172.4E-101161IPR001005SANT/Myb domain
CDDcd001675.89E-111459No hitNo description
PfamPF139211.7E-121574No hitNo description
Gene3DG3DSA:1.10.10.608.2E-1861113IPR009057Homeodomain-like
PROSITE profilePS5129418.20164115IPR017930Myb domain
SMARTSM007174.6E-1265113IPR001005SANT/Myb domain
CDDcd001671.26E-1068107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGYGDHVGI RKGPWKAEED EVLLNHVKRY GPRDWSSIRS NGLLQRTGKS CRLRWVNKLR  60
PNLKNGCKFS LEEERVVIEL QAQFGNKWAK IATYLPGRTD NDVKNFWSSR QKRLARILQT  120
SETPPKSQKY KRQLQSCHGC CQGSNISCPA LEAPKFMSSS SEGESSSRAQ SCSSSCIDNT  180
TEMIRMVAIP DLVSPKLHNF NTDLIHHGFS PADNNPCIEF QPQTPLSEIP QLQPHLTIFL  240
PETQELMDRV EDPSSIFDMF GTLDSSGLGN GTKVSIGPQL FEPVGSFRND ANGKIGNPIN  300
TKGSFFDGFP TDVFDHIEPP PSPLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4640593e-43AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819973.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A2I4EKQ70.0A0A2I4EKQ7_JUGRE; protein ODORANT1-like
STRINGEOX964021e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-78MYB family protein