PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001567-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 361aa    MW: 39997 Da    PI: 9.5929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001567-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.41.5e-2157148187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         +W+++e++aLi+ +r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++
  WALNUT_00001567-RA  57 CWSHDETMALIDSYRDKWYSLRRGNLKATHWQEVADAVaqrcPAASPPKTAVQCRHKMEKLRKRYRTELQRARSMpVSRFTSSWVHFKRMD 147
                         8**********************************99977666777799*************************97799***********8 PP

            trihelix  87 a 87 
                         a
  WALNUT_00001567-RA 148 A 148
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-2356149No hitNo description
SMARTSM005955.4E-1465154IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASSSSPPPT SDITTPPGPP TAMPLPLSLP APPDPQLDSQ PPTTTTTTAS RRLPPPCWSH  60
DETMALIDSY RDKWYSLRRG NLKATHWQEV ADAVAQRCPA ASPPKTAVQC RHKMEKLRKR  120
YRTELQRARS MPVSRFTSSW VHFKRMDAME KGPSSKKRAN LSDSDNDNDD IDADDDEDQD  180
LYEEFKNGGG PNMRHMSKLY RNNGTGGDNG DGGSGGSGFR IRIPTGVSIA QAGSKYFGKA  240
EHKYNSNPNS TPYPNPSSNS GGIFGARVLR ECNSAKSAGS GKRERDPLTE IVSAIQVLGD  300
GFVRMEQMKM EMAREIEAMR MEMEMKRTEM ILESQQRIVE AFAKAVSEKK KKPKRMPSPE  360
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819340.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A2I4EIW40.0A0A2I4EIW4_JUGRE; trihelix transcription factor ASIL2
STRINGGorai.004G167100.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-71Trihelix family protein