PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001509-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YC

Protein Properties

Length: 293aa MW: 32151.4 Da PI: 5.3031

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001509-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl ++v r WALNUT_00001509-RA 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREVVSR 86 5789*************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.64E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	3.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REVVSRVPDY GHGHSDAAGD DRTISKRRKA AADESNESDE 120 ELKKSKMHDM SHAGSSGRGR GRGRGRGRGR GRTAERETSH LETGPNPCTS LQHSNRQQNP 180 DTLMDNGSEA KEFSKENITV GNDANPTARN FDLNAHIDEN EDTKATATAT AAAAAAAAPA 240 SSSGPTTTTE NRLEEVPGWS LSDVDKMAID PLQLARLGSR LDEEEEEDYD EED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	150	RGRGRGRGRG
2	141	151	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818466.1	0.0	PREDICTED: dr1-associated corepressor homolog isoform X1
TrEMBL	A0A2I4EGE1	0.0	A0A2I4EGE1_JUGRE; dr1-associated corepressor homolog isoform X1
STRING	EOY19581	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-72	nuclear factor Y, subunit C11