PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001396-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 421aa    MW: 47471.6 Da    PI: 6.8847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001396-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.7e-084969526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C ++++ G C yG+rC++ H+
  WALNUT_00001396-RA 49 ICTYYQK-GVCAYGSRCRYEHV 69
                        7******.***********997 PP
2zf-CCCH19.32.1e-06158180326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+ fa+ G C++G++C+ +Hg
  WALNUT_00001396-RA 158 RSICS-FAAAGNCPRGEKCPHIHG 180
                         67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1451643IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-71941IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1454471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00194570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-54768IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-44968IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-54969IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009155182IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021156181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4160180IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-13215288No hitNo description
Gene3DG3DSA:3.30.40.108.3E-10217283IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136394.0E-7223282IPR001841Zinc finger, RING-type
CDDcd001627.07E-4223283No hitNo description
PROSITE profilePS5008912.371224282IPR001841Zinc finger, RING-type
SMARTSM001842.4E-7224281IPR001841Zinc finger, RING-type
PROSITE patternPS005180248257IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.028311339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638311340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSKRRYKFFN NIAFPLSSRV LCKFFAHGAC LKGEHCEFSH DWKAPPNNIC TYYQKGVCAY  60
GSRCRYEHVK ASKGNSSASS SSTNPYQALV SDPVSPGHDT RTALSGASPI QGTPLELYAS  120
CRPFIPPTKP AWNEEFVHHD LLDDRDIGEP SSIRPADRSI CSFAAAGNCP RGEKCPHIHG  180
DLCPTCGKHC LHPFRPEERE EHLNTCEKKQ KQLDALKHSQ EIECSVCLER VLSKPTAAER  240
KFGLLSECDH PFCISCIRNW RGSSPTSGLD VNSALRACPI CRKLSYFVVP SVIWYTTKEE  300
KQEIVDSYKA KLKSIDCKHF DFGNGNCPFG TSCFYKHTVK PGSYTWRHHR PPPRRPPPHR  360
TNFVAMDDLF DVFDPLEGLQ DFSAEDLFDE ELTSFEMALL LMDMGSDTCD SLSDEEDFYS  420
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816679.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotE0X9N41e-151C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2I4EBA50.0A0A2I4EBA5_JUGRE; zinc finger CCCH domain-containing protein 69 isoform X1
STRINGEOX967030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-137C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]