PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001369-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 301aa MW: 32472.8 Da PI: 7.6155

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001369-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q WALNUT_00001369-RA 4 SCNGCRVLRKGCSENCSIRPCLmwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 6**************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e++l ++ WALNUT_00001369-RA 95 LCQSAVEAVLKGA 107 ****9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	9.1E-94	1	297	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.832	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLMWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQSAV EAVLKGAPIT AITSEAAASD 120 HGPPLKAYDI RHVSKDENSA ASNDPHRVKT RCRFKRSVIK PRASKVGLGA ADDSSLDVKP 180 KWDGGCCTQE LNRSTSHESS LSHQSELAAN VEGESKETES MISVETAETS VLFLSEPESG 240 PKANEQGQDS EIGLELTLGF EPAWRANHVV PVKKRKVEAC AGGSSTGFGT CKMELGLDYP 300 V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018816783.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-108	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2I4EBL0	0.0	A0A2I4EBL0_JUGRE; LOB domain-containing protein 41-like
STRING	EMJ16944	1e-164	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-102	LOB domain-containing protein 41