PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001364-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 266aa MW: 30110.6 Da PI: 6.2867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001364-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.7e-08	160	206	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++iN ++ L++l+P + k + a++L + ++Y++sL WALNUT_00001364-RA 160 SHSLAERVRRQKINYKLRCLQDLVPGC----RKTMGMAAMLDEIINYVHSL 206 8*************************9....34599999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.81E-9	154	211	No hit	No description
SuperFamily	SSF47459	3.53E-15	154	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-15	156	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.799	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-5	160	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-8	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTGFEQCFKP SIPFSDINTA IEIISQFADP NASIMENFEI TNFTLDNFLG YQQPEYQAGM 60 AHSLSATSHL NCQNELPSLH TSSSTNDVFH ESKKRKVLEL STSSSESLPS AASRNQLKDN 120 YSSAKKNSIG KGKKKSGENE EEKQEEVIHV RAKRGQATDS HSLAERVRRQ KINYKLRCLQ 180 DLVPGCRKTM GMAAMLDEII NYVHSLKNQV EFLSTELTAA CTHDLIWYTE AAEKAKGTNS 240 HEVHEMENWE REQYGEQTLF HSTWPV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018816944.1	0.0	PREDICTED: transcription factor bHLH75-like
TrEMBL	A0A2I4EC21	0.0	A0A2I4EC21_JUGRE; transcription factor bHLH75-like
STRING	EOY04182	2e-95	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14412	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	7e-43	bHLH family protein