PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001309-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 25864.4 Da PI: 9.0607 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 8.8e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl WALNUT_00001309-RA 13 KGAWSKQEDQKLIDYIRNHGEGCWRSLPKAAGLDRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00001309-RA 66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 899*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.953 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.655 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.06E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MRKPCCDKEG TNKGAWSKQE DQKLIDYIRN HGEGCWRSLP KAAGLDRCGK SCRLRWINYL 60 RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISMGI 120 DPNNHRLNQI PSRPQPKCDV SAAATSSESM NNERKPLKSF GKIDRPVSDG ASSSLEDEMP 180 GSLDLNLDLT IAFPSSPPVT LVEEKRQSSK STGTREILLE SEPAPTLILF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816947.1 | 1e-170 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 4e-78 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2I4EC22 | 1e-168 | A0A2I4EC22_JUGRE; transcription repressor MYB6-like | ||||
STRING | XP_008229231.1 | 1e-115 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-80 | myb domain protein 6 |