PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001288-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 76aa MW: 8620.7 Da PI: 4.345 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 57.2 | 4e-18 | 27 | 63 | 3 | 39 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecv 39 eqdrflPianvs+imkk+lP n+kiskdaket+q+cv WALNUT_00001288-RA 27 EQDRFLPIANVSQIMKKALPVNTKISKDAKETMQKCV 63 8***********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-16 | 25 | 63 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.26E-11 | 28 | 64 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-11 | 31 | 63 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MEDLDNESEG GDERARNTST NELSPWEQDR FLPIANVSQI MKKALPVNTK ISKDAKETMQ 60 KCVWLVDEIG VVVKNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018838144.1 | 1e-30 | PREDICTED: nuclear transcription factor Y subunit B-8-like | ||||
Swissprot | Q75IZ7 | 5e-19 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A2I4G2L3 | 3e-29 | A0A2I4G2L3_JUGRE; nuclear transcription factor Y subunit B-8-like | ||||
STRING | evm.model.supercontig_12.151 | 4e-22 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-21 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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