PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001231-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 497aa MW: 54915.6 Da PI: 7.5627 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+++++da k++G W++I +++g ++t+ q++s+ qk+ WALNUT_00001231-RA 60 RERWSEEEHKKFLDALKMYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.16E-16 | 54 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.693 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.8E-16 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.3E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-9 | 60 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.59E-10 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MAIQDQSVGT RSRSVLQGSN EVSLSSGLHS VTGAQLRDRF SSGNDYATKV RKPYTITKQR 60 ERWSEEEHKK FLDALKMYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR DSNGSNASSE 120 PIEIPPPRPK RKPMHPYPRK LVIPPNKEIS TLEQPLRSAS PNLSVSEQEN HSPTSVLSAV 180 GSEAVGSPDL DSPNNSLSPV SSAADVQLGG LVLPEPNQST DRSASPSPAL MTVGSVSDQQ 240 LPVKFELFPK ENACTKEVTS EEASPRQLKL FGRTVLVTDS HRPSCPSTGT SKPIPADMHE 300 EKVVEPLPVN SEPVKSMPGN TECVWSHLPH VPNDALYFMQ CQRKSLNLLE NSSATPIPWW 360 TFCGGLPLPF MPFHKVDPSG GAYGDSALGE VHDKEVRKEG SWTGSNTGSM HDGENGDRCS 420 EAETQSRPFF LRNENQERSM IFQFRPSEKS AFSDLSMSPE KCVKGFVPYK RCMAERETQS 480 STITGQEGDE KRIRLCL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816785.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X2 | ||||
TrEMBL | A0A2I4EBK8 | 0.0 | A0A2I4EBK8_JUGRE; protein REVEILLE 1-like isoform X2 | ||||
STRING | VIT_04s0079g00410.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 9e-73 | MYB_related family protein |