PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001188-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 364aa    MW: 40940.1 Da    PI: 5.445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001188-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07861181955
                         HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +f+ Lr++lP +    ++K +Ka+ L +++eYI+ Lq
  WALNUT_00001188-RA  86 SFQILRDILPRN----DQKRDKASFLLEVIEYIQFLQ 118
                         599********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.4E-1847138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.42648117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-950121No hitNo description
SuperFamilySSF474593.66E-986137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-587118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVKPAKSHDH DHDHEFDDDD DEDDVARNSS CSRISRGDGK SRDQRTMAHR SKHSETEQRR  60
RSKINERQAF FFIFKNFFFF FVNFCSFQIL RDILPRNDQK RDKASFLLEV IEYIQFLQDK  120
LNMYEGQYRG WSSEPKKLIP WRNNRGPAES FADHSQVIKN GFGFENNTVP PALLTNAQNS  180
PESELGTTAV YKALDNPTGS ATPLAPSNVQ MKLNMFDPVV RGGVPTQPLQ ESVSDAENMS  240
SQPQSQWWHA RPYPTECDVQ NSTLNEQELA VDGGSVSISN SYSEEILNSL TQALQSSGVD  300
LSQTCISVQI NAGKPANSRL NGVASNSKDD ETESLNDRVM GHAVVASCRN ESGLAHKRLR  360
TEES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816956.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_018816957.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_018816958.10.0PREDICTED: transcription factor BIM2-like
RefseqXP_018816959.10.0PREDICTED: transcription factor BIM2-like
TrEMBLA0A2I4EC350.0A0A2I4EC35_JUGRE; transcription factor BIM2-like
STRINGXP_006482443.11e-130(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-54BES1-interacting Myc-like protein 2