PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001185-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 260aa MW: 29766.2 Da PI: 10.1856 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.5e-32 | 192 | 246 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+ Wt eLH++Fveav+ LGG+e+AtPk+i+e+m+v+gLt++hvkSHLQkYRl+ WALNUT_00001185-RA 192 NRRTWTVELHAKFVEAVNFLGGPEVATPKQIREVMQVEGLTNDHVKSHLQKYRLH 246 799**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.938 | 188 | 248 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-16 | 190 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 190 | 247 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 193 | 244 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-25 | 193 | 246 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MESVGVNPLE LSLSLKPSYF PKTITNLLKD LRNMNNVWEK LSVLAESLQM HKEELARLEV 60 FKRELPQSAL LLMESIDILE EEIEKVKNKE SEAERPLMEF LTLKNRRINF DDQKEHERQI 120 LGSNGVGKAQ ASSPAFLSNR DHCHLDTSTR PCKFNSGKAR GKEVMNGSGM SSVHPKARVP 180 KPFKPKPIRK TNRRTWTVEL HAKFVEAVNF LGGPEVATPK QIREVMQVEG LTNDHVKSHL 240 QKYRLHNKIF RSQDSSSTSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 193 | 244 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 193 | 244 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 193 | 244 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 193 | 244 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 193 | 244 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816710.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X2 | ||||
TrEMBL | A0A2I4EBD5 | 0.0 | A0A2I4EBD5_JUGRE; myb family transcription factor EFM-like isoform X2 | ||||
STRING | EOY03817 | 2e-52 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14866 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-28 | G2-like family protein |