PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001173-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 423aa    MW: 47317.7 Da    PI: 7.3411
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001173-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.62.8e-111404221374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++ ssg+l+ a+a+L ++s las +gdpmqRlaa f+ ALa+rl++ +++lykal+  + s++++ ++  a  +fs+++P+l
  WALNUT_00001173-RA  40 LIQLLLTCANHTSSGNLHHADACLRQISLLASVSGDPMQRLAARFAYALATRLVKRWPGLYKALSHIQRSKSTEGDR--ACAFFSQAFPYL 128
                         689*************************************************************9999987666666..5668******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          f++ +  +++++a+++e+ +Hi+D++ + +  W+++++++a  ++gpp lRiT v+s    +k  l+++g rL k Ae+lg+pf+fn+l 
  WALNUT_00001173-RA 129 GFAYAIIARTLVQAMSEERVIHIVDLGSGDPKLWVPFMRSFALMDHGPPYLRITCVNS----NKVVLQNLGTRLVKEAESLGMPFQFNPL- 214
                         **********************************************************....9**************************5. PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                           +l dl++++L++++gEala  ++l+lh ll                 + ++  ++  e+L +v+s+sPkv+ +veqeadhn +++++rf
  WALNUT_00001173-RA 215 NVSLRDLTTDMLKIRSGEALAMVSILSLHVLLaeddrvdahfgfggskGNGMKDCKQMAEFLAMVRSMSPKVFLLVEQEADHNLNRLVDRF 305
                         889******************************************987333444446788******************************* PP

                GRAS 258 lealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                         +e l+yysa+fdsl++++++ s eer   E++ +grei+++vaceg er+erhe++++W  r+++aG+kpv+l ++ + +ak +++ ++ d
  WALNUT_00001173-RA 306 VEGLHYYSAIFDSLDVNYGSVSsEERLAAEEM-FGREIEEIVACEGMEREERHERYARWMVRFGRAGLKPVRLWSDKMVDAKQMVEAYGRD 395
                         *******************9994555555555.********************************************************** PP

                GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                         gy++ +++++++++W+++pL++vSaW+
  WALNUT_00001173-RA 396 GYKIMKDKACMMICWHEQPLFAVSAWT 422
                         **************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.54214402IPR005202Transcription factor GRAS
PfamPF035149.8E-10940422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSSTSPSSKL DVNLSLTLPA SSAGPGPVEA LKPEERGIHL IQLLLTCANH TSSGNLHHAD  60
ACLRQISLLA SVSGDPMQRL AARFAYALAT RLVKRWPGLY KALSHIQRSK STEGDRACAF  120
FSQAFPYLGF AYAIIARTLV QAMSEERVIH IVDLGSGDPK LWVPFMRSFA LMDHGPPYLR  180
ITCVNSNKVV LQNLGTRLVK EAESLGMPFQ FNPLNVSLRD LTTDMLKIRS GEALAMVSIL  240
SLHVLLAEDD RVDAHFGFGG SKGNGMKDCK QMAEFLAMVR SMSPKVFLLV EQEADHNLNR  300
LVDRFVEGLH YYSAIFDSLD VNYGSVSSEE RLAAEEMFGR EIEEIVACEG MEREERHERY  360
ARWMVRFGRA GLKPVRLWSD KMVDAKQMVE AYGRDGYKIM KDKACMMICW HEQPLFAVSA  420
WTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-50264221378Protein SCARECROW
5b3h_D2e-50264221378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816712.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A2I4EBE20.0A0A2I4EBE2_JUGRE; scarecrow-like protein 3
STRINGEOY037820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF158131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-111scarecrow-like 3