PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001077-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24396.6 Da PI: 9.1192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 8.8e-19 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++Wk+ a + g++R++k+c++rw++yl WALNUT_00001077-RA 30 KGAWTAEEDRKLAEVIEIHGAKRWKKLADKSGLNRCGKSCRLRWLNYL 77 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 83 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l WALNUT_00001077-RA 83 RGNISAQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 128 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.657 | 25 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-29 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-17 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.26E-11 | 32 | 77 | No hit | No description |
SMART | SM00717 | 1.5E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.801 | 82 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-14 | 83 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 85 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.14E-9 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MASTTDKSIK KEVSRLEAKN KIYTKKEVSK GAWTAEEDRK LAEVIEIHGA KRWKKLADKS 60 GLNRCGKSCR LRWLNYLRPN IKRGNISAQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI 120 KNYWNSHLSK KIKQEKQRGA ATVEGCNAQE NKAEEKVNVE MREEENSAGG VADSEKIKFD 180 VDEFFDFSNE SALNLEWISK FLEPDQDFND II |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 27 | 132 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468035 | 4e-32 | AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833433.1 | 1e-153 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q38850 | 4e-53 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A2I4FP77 | 1e-152 | A0A2I4FP77_JUGRE; transcription factor MYB114-like | ||||
STRING | EOY27239 | 9e-96 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 3e-54 | myb domain protein 66 |
Publications ? help Back to Top | |||
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