PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001056-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 671aa MW: 73865.4 Da PI: 8.0054

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001056-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.3e-38	274	333	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrkn + WALNUT_00001056-RA 274 PDKLLQCPRCNSFDTKFCYFNNYNVKQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNMHL 333 78999***************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.420.10	6.1E-6	152	203	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	2.15E-9	152	212	IPR012337	Ribonuclease H-like domain
Pfam	PF13456	3.1E-5	153	205	No hit	No description
ProDom	PD007478	9.0E-27	262	330	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-31	276	331	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.931	278	332	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	280	316	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MCFWSWELRL QSSLHFATGN KSFESFRTQK MTSSGAMSSE ATTEDPGIKL FGRKIHLPQC 60 SIPARPDVMA VIRTVFVGRS GQDVLVWKPA QDVDDKVQAR GIEMASKCDC CSSPKKETMD 120 HVLVTGQIPE KVVLMEKALQ SPDGRHPRKS HSCRGNPGNC GGGGVLRDHK GDIKAGFSAP 180 YGFGTNNEAE LRALSQGVRL CKSMACESCC DTTKVEVRNS YADNLWKAQK PSASGDKNEE 240 PHTPVPVEAP VDHMPKELQV ESNTAEEDKV FKKPDKLLQC PRCNSFDTKF CYFNNYNVKQ 300 PRHFCKNCQR YWTAGGTMRN VPVGAGRRKN MHLASQHRQV MVSYNGVATM RSEALDQMGN 360 GTFLKFGPEA PLSESIKTFP HLRKQKLCVE MGSGNVGENK ERPSCRLSMT ACSNQGNQSS 420 ENIVQMERVG SWDHVTMHPL DCYPVPQWGF PWTAGLHNAA SVATEEHASE CITIPNGGDP 480 NPVQCYPTPR LAVPGFHPPS IPLQFLPASY WGCTPVWPAG AGSVSMTGSS VCLSPCPSIS 540 CYPSSDNNFR QAFQRCILST GPFSSSTNSR PVGHTALTCI YDFNQAYTTV APASAHYSAS 600 TYATDGAWYP DMTTNHITSK LANLNLQFAD YQGPDQLHVG DGFCDAPNLC SRRNGDLERR 660 DMQHKVTYPR T

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MCFWSWELRL QSSLHFATGN KSFESFRTQK MTSSGAMSSE ATTEDPGIKL FGRKIHLPQC  60
SIPARPDVMA VIRTVFVGRS GQDVLVWKPA QDVDDKVQAR GIEMASKCDC CSSPKKETMD  120
HVLVTGQIPE KVVLMEKALQ SPDGRHPRKS HSCRGNPGNC GGGGVLRDHK GDIKAGFSAP  180
YGFGTNNEAE LRALSQGVRL CKSMACESCC DTTKVEVRNS YADNLWKAQK PSASGDKNEE  240
PHTPVPVEAP VDHMPKELQV ESNTAEEDKV FKKPDKLLQC PRCNSFDTKF CYFNNYNVKQ  300
PRHFCKNCQR YWTAGGTMRN VPVGAGRRKN MHLASQHRQV MVSYNGVATM RSEALDQMGN  360
GTFLKFGPEA PLSESIKTFP HLRKQKLCVE MGSGNVGENK ERPSCRLSMT ACSNQGNQSS  420
ENIVQMERVG SWDHVTMHPL DCYPVPQWGF PWTAGLHNAA SVATEEHASE CITIPNGGDP  480
NPVQCYPTPR LAVPGFHPPS IPLQFLPASY WGCTPVWPAG AGSVSMTGSS VCLSPCPSIS  540
CYPSSDNNFR QAFQRCILST GPFSSSTNSR PVGHTALTCI YDFNQAYTTV APASAHYSAS  600
TYATDGAWYP DMTTNHITSK LANLNLQFAD YQGPDQLHVG DGFCDAPNLC SRRNGDLERR  660
DMQHKVTYPR T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-37	cycling DOF factor 2