PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00001052-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 41908.7 Da PI: 7.5839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 110 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ WALNUT_00001052-RA 110 RGHWRPAEDAKLKELVAQFGPQNWNLIAENLE-GRSGKSCRLRWFNQ 155 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 162 | 205 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ WALNUT_00001052-RA 162 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 205 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.808 | 105 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 109 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 110 | 155 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 110 | 203 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 111 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.61E-13 | 113 | 154 | No hit | No description |
PROSITE profile | PS51294 | 27.671 | 157 | 211 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 161 | 209 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 162 | 204 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-21 | 164 | 210 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-7 | 173 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MSGYQNMNFM PPPPASQLSL CDTVEAMDHP GERSSRTTGS GFQILGPSLE NGKNPWGFQP 60 IENVGTETAD DGSNGYFGVE RKGLPLKFGE EEENKSSAAG KSGHTRLCAR GHWRPAEDAK 120 LKELVAQFGP QNWNLIAENL EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLLAAHRLY 180 GNKWAMIARL FPGRTDNAVK NHWHVIMARK HREQSSVYRR RKPSSSQILT KGFEMSFQNN 240 ACSESANSST VDESASTCTD LSLTPSSEKV PPSFFTHFSP VQRYQPYGSQ MGFSGDQMVT 300 IGDGGLDKFY CTDNGFYKAG PIGTVMGMDH FGHSDSNSEV SAAESVATNK TNIPVSAGKN 360 QNRNEKIKMP FIDFLGVGA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 110 | 210 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833403.1 | 0.0 | PREDICTED: myb-related protein B-like | ||||
TrEMBL | A0A2I4FP47 | 0.0 | A0A2I4FP47_JUGRE; myb-related protein B-like | ||||
STRING | cassava4.1_024606m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-71 | myb domain protein 56 |