PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001052-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 379aa    MW: 41908.7 Da    PI: 7.5839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001052-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16110155147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  WALNUT_00001052-RA 110 RGHWRPAEDAKLKELVAQFGPQNWNLIAENLE-GRSGKSCRLRWFNQ 155
                         899*****************************.***********996 PP

2Myb_DNA-binding57.53.1e-18162205146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  WALNUT_00001052-RA 162 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 205
                         678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.808105156IPR017930Myb domain
SMARTSM007174.8E-14109158IPR001005SANT/Myb domain
PfamPF002491.2E-15110155IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-28110203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26111163IPR009057Homeodomain-like
CDDcd001673.61E-13113154No hitNo description
PROSITE profilePS5129427.671157211IPR017930Myb domain
SMARTSM007172.2E-15161209IPR001005SANT/Myb domain
PfamPF002491.1E-14162204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-21164210IPR009057Homeodomain-like
CDDcd001671.25E-7173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSGYQNMNFM PPPPASQLSL CDTVEAMDHP GERSSRTTGS GFQILGPSLE NGKNPWGFQP  60
IENVGTETAD DGSNGYFGVE RKGLPLKFGE EEENKSSAAG KSGHTRLCAR GHWRPAEDAK  120
LKELVAQFGP QNWNLIAENL EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLLAAHRLY  180
GNKWAMIARL FPGRTDNAVK NHWHVIMARK HREQSSVYRR RKPSSSQILT KGFEMSFQNN  240
ACSESANSST VDESASTCTD LSLTPSSEKV PPSFFTHFSP VQRYQPYGSQ MGFSGDQMVT  300
IGDGGLDKFY CTDNGFYKAG PIGTVMGMDH FGHSDSNSEV SAAESVATNK TNIPVSAGKN  360
QNRNEKIKMP FIDFLGVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331102107107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833403.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A2I4FP470.0A0A2I4FP47_JUGRE; myb-related protein B-like
STRINGcassava4.1_024606m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-71myb domain protein 56