PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001012-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 34046 Da PI: 8.1197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 100 | 142 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR+++++ f++L llP++ +K +K++i+ +Av YIk L WALNUT_00001012-RA 100 TERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVSYIKTL 142 6*********************6....39****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 91 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.687 | 92 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 97 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-12 | 97 | 147 | No hit | No description |
Pfam | PF00010 | 1.0E-9 | 100 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-8 | 100 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.1E-4 | 233 | 290 | No hit | No description |
CDD | cd04873 | 2.76E-4 | 236 | 275 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSEGGEGIGH ESFLWENQSW AFSNSDNSAG SEGKSSKKLP VSSSNSQIEI GAKEVALPPS 60 KKKRGRGSVG KNGNASTGGD QGKGEGKGGG ESDHDIHIWT ERERRKKMRN MFANLHALLP 120 QLPPKADKST IVDEAVSYIK TLHHTLQKLQ KQKLERLQGG AASTFGFESP ILISQRLSSD 180 SREAFLADQG SSNNLGAVTA NNSYSNPLSA SLRYPVNFET WTSSNVVLNI CGEEAQISVC 240 SSTKPGLLTT ICYVLEKHRI EVVSAHINSD SNRSMYNIHA RVSGASNHQF QEPAAFPVEE 300 IYKLAAGEIM LWVS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831533.1 | 0.0 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | A0A2I4FIQ6 | 0.0 | A0A2I4FIQ6_JUGRE; transcription factor bHLH95-like | ||||
STRING | VIT_03s0063g00170.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 9e-49 | bHLH family protein |