PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000909-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HSF | ||||||||
Protein Properties | Length: 89aa MW: 9966.45 Da PI: 7.3517 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 31.1 | 6.2e-10 | 18 | 74 | 2 | 57 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-.HHHHHH..HTHHHHSTT--HHHHHHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvld.eeefak..kvLpkyFkhsnfaSFvRQL 57 Fl+kly +++++e+++++sws+ +nsfvv++ +++++ + p+++k+ nf Fv+QL WALNUT_00000909-RA 18 FLRKLYAMVDHPETNSVVSWSDGNNSFVVWKtGTRMSSppSFYPSTYKTLNF--FVQQL 74 9*****************************9445565522455666776666..67776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-10 | 12 | 74 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.86E-9 | 15 | 68 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.2E-7 | 18 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MVDVNDAGSL TTETLLPFLR KLYAMVDHPE TNSVVSWSDG NNSFVVWKTG TRMSSPPSFY 60 PSTYKTLNFF VQQLCGLESR ASILLVVKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829016.1 | 4e-19 | PREDICTED: heat stress transcription factor A-1b-like | ||||
Refseq | XP_018829017.1 | 4e-19 | PREDICTED: heat stress transcription factor A-1b-like | ||||
TrEMBL | A0A2I4FBJ6 | 9e-18 | A0A2I4FBJ6_JUGRE; heat stress transcription factor A-1b-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 3e-12 | heat shock factor 3 |