PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000859-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 394aa    MW: 43347.6 Da    PI: 7.7633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000859-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.6e-07142162526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck  d C FaHg
  WALNUT_00000859-RA 142 ACPDFRK-GNCKKSDACEFAHG 162
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0889126IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5137163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.465138164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4141164IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5142162IPR000571Zinc finger, CCCH-type
SMARTSM0035614172195IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643172196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMLGEPHRPN PTVHVPPWPL QDDPTADMYA PYSLSPLSVN SDGNANSSGG DYSSYYIQEA  60
LTALQRYLPS NGTDIDSDFD VVGRESDAPV DAYSCDHFRM FEFKVRRCAR GRSHDWTECP  120
YAHPGEKARR RDPRKYHYSG TACPDFRKGN CKKSDACEFA HGVFECWLHP ARYRTQPCKD  180
GTSCRRRVCF FAHTPEQLRV LPQQSPRSVS NSVNSVESYD GSPLRHAIEA TCAKSLSFLS  240
SPSSISPPGT PPADSPPLSP MTQSLSRSLG SSSINEMAAS LRNLQLGKVK SLPSSRNVPM  300
GSPVFGSPRG SMLRPGFCSV PTTPTQVPTR PGIGYLDCWD QCCAEEPPME RVESGRDLRA  360
KMFEKLSKEN SLGRVETSPS SGGPDVGWVS ELVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846592.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-142C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2I4GRS10.0A0A2I4GRS1_JUGRE; zinc finger CCCH domain-containing protein 20-like
STRINGXP_008242454.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-120C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]