PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000849-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 466aa    MW: 52472.3 Da    PI: 7.1034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000849-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.94.1e-36471891128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  WALNUT_00000849-RA  47 LPAGVKFDPTDQELI-EHLEAKVEAKDmkshplI---DefitTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKIQt 132
                         799************.99*********5555442...133334776646**********.555666799******************7333 PP

                 NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  WALNUT_00000849-RA 133 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                         4555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-3843208IPR003441NAC domain
PROSITE profilePS5100532.8347208IPR003441NAC domain
PfamPF023652.6E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNKSSTVGSI SSSDLIDAKL EEHKMCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMKSHPLID EFITTIEGED GICYTHPEKL PGVTRDGLSK HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS TATTGEASSE PNSRRDSGSG  240
SCSSREIVPQ RDELSPPSGV APISSYSTAM DIHQQFKSDH FSFAPFRKSF DEVGIGEAST  300
AREAPGASGG GGTCEDMRDH QRPHHPMAHD HHHQQQHQHH HPHHQIATTA FHISRPSHPI  360
STIISPPPLH HTSIILDQDH SYHISRIMLQ NENFQQQQQQ LEQVQQPQQQ QHHKLGGRSA  420
SGLEELIMGC TSSNIKEESS ITNPHEADWL KYPSFWPDPD NPDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846428.10.0PREDICTED: uncharacterized protein LOC109010158 isoform X1
RefseqXP_018846438.10.0PREDICTED: uncharacterized protein LOC109010158 isoform X1
RefseqXP_018846448.10.0PREDICTED: uncharacterized protein LOC109010158 isoform X1
RefseqXP_018846457.10.0PREDICTED: uncharacterized protein LOC109010158 isoform X1
RefseqXP_018846466.10.0PREDICTED: uncharacterized protein LOC109010158 isoform X1
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2I4GRD90.0A0A2I4GRD9_JUGRE; uncharacterized protein LOC109010158 isoform X1
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-119NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]