PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000787-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 532aa    MW: 60310.3 Da    PI: 8.452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000787-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12354398554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L+ + eY++sL
  WALNUT_00000787-RA 354 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASLLTTTREYLSSL 398
                         8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.42E-12349403No hitNo description
PROSITE profilePS5088815.281349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16350419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14353415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10354398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MIMDTTFLLD EADRANFFRL IMQSIGRYTH ICLWLYSPHP SNCLYFMDGF FYEENNQPSS  60
SSGSRARRLF DEYRNSSFPM VENECVPGLA FRNSRPYMEV QELNLQRLAS TEAQRLFYQE  120
ARIKTAVFMG CKSGEIEIGF ANVSQLDIEK EMKNLFPEDL SRSFSPIAEP FWRPDQNLPS  180
SSSSSLKSLT DSPEYSSLLL NIPSTSHFPE ALRDQVIPTM AMPQMPTSTS PHHQALQALA  240
AAANIQFPAP ETENSAIARA ILTVLSSHSS SSSLSPHQTQ QNLPYGSHRE NSKPSAFKSY  300
VSALGPRTST QIRANNARRQ SLLNRSVLFY RSLNFLRVRE RMQTTRPTST QLHHMISERK  360
RREKLNESFQ ALRSLLPPGT KKDKASLLTT TREYLSSLKA QVAELTRRNQ LLEAQQLLPA  420
KEANEEETSS SNERLMVRIS AVSGSSSPDQ ERIVELRVTV RGECPMEDMA IRILEFLKQV  480
QNVSLVSMET NIIQITESTS STRITMRLRI VGNDWDEAAF REAVRRVVAD LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362ERKRRE
2358363RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845545.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A2I4GNR90.0A0A2I4GNR9_JUGRE; putative transcription factor bHLH041
STRINGXP_008242363.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-63bHLH family protein