PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000780-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HSF | ||||||||
Protein Properties | Length: 480aa MW: 53694.4 Da PI: 4.6361 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.6 | 2.3e-34 | 135 | 226 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Flkk++e++ed+++++++swse+ +sf v+de+ fa+++Lp+yFkh+nf+SF+RQLn+YgFkk+++++ w+F+++ F+ gkk+ WALNUT_00000780-RA 135 FLKKIFEMVEDPDTDTVVSWSETRDSFTVWDEHVFAQDLLPRYFKHRNFSSFIRQLNTYGFKKIDTDN---------WKFANEGFQGGKKH 216 9*****************************************************************99.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++ikr+++ WALNUT_00000780-RA 217 LLKSIKRRSR 226 *******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.22E-32 | 131 | 224 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.7E-52 | 131 | 224 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.5E-36 | 131 | 224 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.4E-18 | 135 | 158 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.2E-30 | 135 | 224 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-18 | 173 | 185 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 174 | 198 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-18 | 186 | 198 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MVTESDGGHT FSSLPMKEQV VDEEEEEETR TTPSDNNPSN SGGAPHGGSS STAIWTPVHD 60 INDTAPPTRT KVSEVGDIEV VHIKKEEEED EEEEEDRDVA NFDSDGGGNG PSSSSSLAAV 120 PKPMEGLHEP GPPPFLKKIF EMVEDPDTDT VVSWSETRDS FTVWDEHVFA QDLLPRYFKH 180 RNFSSFIRQL NTYGFKKIDT DNWKFANEGF QGGKKHLLKS IKRRSRLNKQ QQQQQQGAVG 240 VNPKKPGFEA ELESLREDQN VLKVEILNLR QEQQDSQNHL GAVKNRIRGA ECRLQQTLFF 300 LTKITKSPGF AQQLIQKTKQ QKRELDGGEF VKRRRLLASH GREKAIDNSH SINCRNHVQG 360 DLVTTLSLLS KILEEAVDID TTHPVQTPFP APIDDALCSL EDQNVNVMYR SSSSPNISSA 420 YDVMAENLPE DNLNIVDEEL DMNDDSKFYS ELEDLIVKQH DLGGFRGGLV EQAGCIGAIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-23 | 133 | 224 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-23 | 133 | 224 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-23 | 133 | 224 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 223 | LKSIKRR |
2 | 331 | 335 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845450.1 | 0.0 | PREDICTED: heat stress transcription factor A-2-like | ||||
TrEMBL | A0A2I4GNH2 | 0.0 | A0A2I4GNH2_JUGRE; heat stress transcription factor A-2-like | ||||
STRING | POPTR_0006s15050.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 8e-75 | heat shock transcription factor A2 |