PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000740-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 324aa    MW: 36378.8 Da    PI: 5.9715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000740-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++ Ed +lv+ vk +G g W+ ++++ g++R++k+c++rw++yl
  WALNUT_00000740-RA 14 RGAWSAKEDNILVNFVKVHGEGKWRDVPQRAGLKRCGKSCRLRWLNYL 61
                        89********************************************97 PP

2Myb_DNA-binding52.41.2e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  WALNUT_00000740-RA  67 RGNISSEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                         7899******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129418.242961IPR017930Myb domain
SuperFamilySSF466894.12E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
CDDcd001671.06E-91661No hitNo description
PROSITE profilePS5129425.74362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1467110IPR001005SANT/Myb domain
CDDcd001671.67E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRKPCCAKE GLNRGAWSAK EDNILVNFVK VHGEGKWRDV PQRAGLKRCG KSCRLRWLNY  60
LRPDIRRGNI SSEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KLRKKVQGHD  120
HDNINDSSKQ EDGTELKDNK LGSMTPVSDI RGTGPLETSQ SVIRPKAMRC AKVVMPWPLI  180
DNGMVNNHEH TIPGGDSESP CRSAQRDNNS YGFLMDFDVN DLLISDVLYS DGHQVHKDQI  240
VECENLVDGG VLEPCKNMPS SSSVEDIAVS GHVEAKVDDS LLDVVAAENW RESTDHPVQP  300
NADSLDLKTL AAFLNLEDDH EWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844016.10.0PREDICTED: transcription repressor MYB5-like
TrEMBLA0A2I4GJE30.0A0A2I4GJE3_JUGRE; transcription repressor MYB5-like
STRINGXP_008242210.11e-95(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-57myb domain protein 4