PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000740-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36378.8 Da PI: 5.9715 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed +lv+ vk +G g W+ ++++ g++R++k+c++rw++yl WALNUT_00000740-RA 14 RGAWSAKEDNILVNFVKVHGEGKWRDVPQRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ WALNUT_00000740-RA 67 RGNISSEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.242 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.743 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRKPCCAKE GLNRGAWSAK EDNILVNFVK VHGEGKWRDV PQRAGLKRCG KSCRLRWLNY 60 LRPDIRRGNI SSEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KLRKKVQGHD 120 HDNINDSSKQ EDGTELKDNK LGSMTPVSDI RGTGPLETSQ SVIRPKAMRC AKVVMPWPLI 180 DNGMVNNHEH TIPGGDSESP CRSAQRDNNS YGFLMDFDVN DLLISDVLYS DGHQVHKDQI 240 VECENLVDGG VLEPCKNMPS SSSVEDIAVS GHVEAKVDDS LLDVVAAENW RESTDHPVQP 300 NADSLDLKTL AAFLNLEDDH EWIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844016.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
TrEMBL | A0A2I4GJE3 | 0.0 | A0A2I4GJE3_JUGRE; transcription repressor MYB5-like | ||||
STRING | XP_008242210.1 | 1e-95 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-57 | myb domain protein 4 |